Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2395 ATGCCGGCGCGTAGTGACGGTAGAAATGAGAGTGGAAGGCAGCCGAGAGGTCACTCGATCTTTGCTTTCCCTTCTATTCGACCCTGCTCTATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTTTCCGATCAAGAATCTGACGCCATCGTAGTCAAATCTCCACAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACTGATAGAGCTGCCGGTCCTAGATTTACTGAGGTTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTACCGTGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATAGTAACAGAGGATACCAGGGGAAAGGAAGTTGAAACACGGGAACAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCTGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCAATGATGCACCTGATTTGCCTTCTACCAATCCTTCTAGCAGCTGA 1479 45.57 MPARSDGRNESGRQPRGHSIFAFPSIRPCSMSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLSDQESDAIVVKSPQLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLTVEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEVETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVSSPQTQTPLPNDAPDLPSTNPSSS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36291562 36298795 - CcPI632755_02g023950.1 Cco02g2395 173152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2395 492 PANTHER TRANSCRIPTION FACTOR E2F 61 447 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cco02g2395 492 MobiDBLite consensus disorder prediction 464 492 - -
Cco02g2395 492 Pfam E2F transcription factor CC-MB domain 251 351 IPR032198 GO:0046983(InterPro)
Cco02g2395 492 MobiDBLite consensus disorder prediction 1 43 - -
Cco02g2395 492 Gene3D - 242 352 - -
Cco02g2395 492 SMART E2F_TDP_2 170 235 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco02g2395 492 Coils Coil 186 206 - -
Cco02g2395 492 MobiDBLite consensus disorder prediction 120 165 - -
Cco02g2395 492 Gene3D - 164 237 IPR036388 -
Cco02g2395 492 SUPERFAMILY E2F-DP heterodimerization region 247 352 IPR037241 -
Cco02g2395 492 CDD E2F_DD 246 352 IPR032198 GO:0046983(InterPro)
Cco02g2395 492 SUPERFAMILY Winged helix DNA-binding domain 170 233 IPR036390 -
Cco02g2395 492 Pfam E2F/DP family winged-helix DNA-binding domain 172 235 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco02g2395 492 FunFam E2F transcription factor 1 164 237 - -
Cco02g2395 492 MobiDBLite consensus disorder prediction 139 165 - -
Cco02g2395 492 Coils Coil 255 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2395 K06620 - - csv:101219318 895.575
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1432 Cco-Chr1:26083340 Cco02g2395 Cco-Chr2:36291562 1.80E-09 dispersed
Cco02g2395 Cco-Chr2:36291562 Cco08g1629 Cco-Chr8:27819065 6.10E-63 dispersed
Cco02g2395 Cco-Chr2:36291562 Cco04g1250 Cco-Chr4:27876788 8.30E-137 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1278 . . Bda02g00683 Bda09g01394 Bpe01g00263 . . . . . . . . . . Cpe05g00398 . . . . . . . . Cla02g02172 Cam02g2314 Cec02g2351 Cco02g2395 Clacu02g2289 Cmu02g2221 Cre02g2545 Cone1ag0555 Cone5ag1327 . . . Csa06g02465 . . Blo08g00058 Blo14g00243 . . Bpe08g00221 . Bma07g00205 Bma11g00246 . Cmo02g01350 Cmo20g00168 Cma02g01309 Cma20g00153 Car02g01097 Car20g00133 Cpe16g00820 . Bhi10g00181 . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g1432 . 38 396 E2F-DP Transcription Factor Family AT3G48160 56.5 1.3e-103 373.6
Cco10g0876 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cco02g2395 . 51 471 E2F-DP Transcription Factor Family AT2G36010 55.1 3.1e-120 429.1
Cco04g1250 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.2 1.0e-118 424.1
Cco02g2395 . 40 476 E2F-DP Transcription Factor Family AT5G22220 57.6 7.7e-116 414.5
Cco04g1250 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.2e-97 354.0
Cco08g1629 . 154 413 E2F-DP Transcription Factor Family AT1G47870 53.1 2.1e-66 250.0
Cco02g2395 . 169 445 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cco10g0876 . 81 284 E2F-DP Transcription Factor Family AT5G02470 55.1 6.4e-60 228.0
Cco02g2395 . 40 476 E2F-DP Transcription Factor Family AT5G22220 57.6 7.7e-116 414.5
Cco04g1250 . 11 460 E2F-DP Transcription Factor Family AT5G22220 50.3 1.2e-97 354.0
Cco02g2395 . 51 471 E2F-DP Transcription Factor Family AT2G36010 55.1 3.1e-120 429.1
Cco04g1250 . 11 467 E2F-DP Transcription Factor Family AT2G36010 54.2 1.0e-118 424.1
Cco08g1629 . 154 413 E2F-DP Transcription Factor Family AT1G47870 53.1 2.1e-66 250.0
Cco02g2395 . 169 445 E2F-DP Transcription Factor Family AT1G47870 50.9 6.4e-63 238.4
Cco01g1432 . 38 396 E2F-DP Transcription Factor Family AT3G48160 56.5 1.3e-103 373.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58864 PF16421 E2F_CC-MB 1.60E-34 No_clan Cco TF