Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2395 ATGCCGGCGCGTAGTGACGGTAGAAATGAGAGTGGAAGGCAGCCGAGAGGTCACTCGATCTTTGCTTTCCCTTCTATTCGACCCTGCTCTATGTCGGGTTCTCGAGCTCCTAACTCCTCTGGACACCTGCCTGAGCAGATCATGCACTCTCTTAAGCGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTTGCCCCGGACCCTCGACTTTCCGATCAAGAATCTGACGCCATCGTAGTCAAATCTCCACAATTGAAGAGGAAGAGTGAGGTAGCAGATTATGAAGCTGAGTCAACTGATAGAGCTGCCGGTCCTAGATTTACTGAGGTTGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACCAAATGCAGTAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTATGATAGTTCTCTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAGGGAATTGGTCTCATAGAAAAGAAGCTTAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTCGATGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTACCGTGGAGGAGCGTGGAATAGACGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTGCCCTGTTTCCAGAATGAAACTCTCATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTTCCAGATCCTGATGAGGCTGTTGACTACCCCCAAAGGAGGTACAGGATAGTACTCAGAAGCACCATGGGCCCCATTGATGTTTACCTTGTTAGTCAGTTTGAAGCGAAGTTTGAGGAGATAAATGCTGTGGAAGTGCCCCCAAGCTTGCCGTCAAGTTCAGGATTGAATGAAGCACCTGCAACAACGATAGTAACAGAGGATACCAGGGGAAAGGAAGTTGAAACACGGGAACAAGATGTACACAGAATGTGCTCCGATCTAAATGCTTCACAGGACTTCGTGGGTGGAATTATGAAAATTGTTCCCTCTGTTGTAGATAGTGATGCTGATTACTGGCTCTTGTCTGATGCTGATGTTAGTATCACAGACATGTGGAGAACTGAACCTGGCGTTGAGTGGAATGAATTGGGTACATTTCATGAAGATTATAGTATTGGCAATGTCAGCTCACCCCAAACCCAGACTCCACTTCCCAATGATGCACCTGATTTGCCTTCTACCAATCCTTCTAGCAGCTGA 1479 45.57 MPARSDGRNESGRQPRGHSIFAFPSIRPCSMSGSRAPNSSGHLPEQIMHSLKRQLPFSSMKPPFASPGDYHRFAPDPRLSDQESDAIVVKSPQLKRKSEVADYEAESTDRAAGPRFTEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLTVEERGIDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEAKFEEINAVEVPPSLPSSSGLNEAPATTIVTEDTRGKEVETREQDVHRMCSDLNASQDFVGGIMKIVPSVVDSDADYWLLSDADVSITDMWRTEPGVEWNELGTFHEDYSIGNVSSPQTQTPLPNDAPDLPSTNPSSS 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36291562 36298795 - CcPI632755_02g023950.1 Cco02g2395 173152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2395 492 PANTHER TRANSCRIPTION FACTOR E2F 61 447 IPR015633 GO:0000978(PANTHER)|GO:0000978(InterPro)|GO:0000981(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)|GO:0090575(PANTHER)
Cco02g2395 492 MobiDBLite consensus disorder prediction 464 492 - -
Cco02g2395 492 Pfam E2F transcription factor CC-MB domain 251 351 IPR032198 GO:0046983(InterPro)
Cco02g2395 492 MobiDBLite consensus disorder prediction 1 43 - -
Cco02g2395 492 Gene3D - 242 352 - -
Cco02g2395 492 SMART E2F_TDP_2 170 235 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco02g2395 492 Coils Coil 186 206 - -
Cco02g2395 492 MobiDBLite consensus disorder prediction 120 165 - -
Cco02g2395 492 Gene3D - 164 237 IPR036388 -
Cco02g2395 492 SUPERFAMILY E2F-DP heterodimerization region 247 352 IPR037241 -
Cco02g2395 492 CDD E2F_DD 246 352 IPR032198 GO:0046983(InterPro)
Cco02g2395 492 SUPERFAMILY Winged helix DNA-binding domain 170 233 IPR036390 -
Cco02g2395 492 Pfam E2F/DP family winged-helix DNA-binding domain 172 235 IPR003316 GO:0005667(InterPro)|GO:0006355(InterPro)
Cco02g2395 492 FunFam E2F transcription factor 1 164 237 - -
Cco02g2395 492 MobiDBLite consensus disorder prediction 139 165 - -
Cco02g2395 492 Coils Coil 255 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1432 Cco-Chr1:26083340 Cco02g2395 Cco-Chr2:36291562 1.80E-09 dispersed
Cco02g2395 Cco-Chr2:36291562 Cco08g1629 Cco-Chr8:27819065 6.10E-63 dispersed
Cco02g2395 Cco-Chr2:36291562 Cco04g1250 Cco-Chr4:27876788 8.30E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58864 PF16421 E2F_CC-MB 1.60E-34 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2395 K06620 - csv:101219318 895.575