Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2400 ATGGCGACGTACTTTCACGGTGGTTCAGAAATCCAAGCGAATTCTGACGGAATTCATACTCTTTACCTTATGAACCCAAATTACGTACCTTACTCTGACACCCACTCTCAAACGCCTCCCAATATGCTCTTTCTCAACTCTTCTTCAACTCACGCGCTTAACCCTTCAACTCTTCCTCACGCGCCGCCTTCCAACAACCACTTCGTCGGAATTCCCCTCCCGACCACCGACAATCCTCGTCCATCCTACCACGAAATCTCAACCCTCCATCGGATGCCACCTCACCGCCTCCACTACAATCTATGGGCTCCCATGGACCAACAACCCCATCACGGAATTTCCGGCGATTCCGCCGATTTGACCTTCCGCCGCCCCACCACACAACAAGGTTTGTCCTTAAGCCTCTCCTCCCAACAATCGCTTTACCGGACACTCTCGGCCGAGCAGGAGATTCAAGGCGGCGGCGGCGGTGCTCCAAGTGGGGAGGAAATTCGGGTGTCGGGAAATTCACCGACGTCGGTGTCGGTGGTGTCGAGTGGAATAACGGGCGCTCAAAGCGTGATATTGGGGTCTAAGTACTTGAAAGCGGCTCAAGAACTTTTGGATGAAGTGGTTCATGTTGGCAAAGGAAATTTTAAATCCGACAAAGGGGATGGGACAAAGGACAAGATGAAGATGAAGAAAGAATCAACGGCTACGATTGGTGGAGACCCTTCCGTCTCCGTCGGCGGTGGTGAAAGTACTTCCAAGCCTGTTGCTGAGCTCAGCACTGCTCAAAGACAGGACCTTCAGATGAAAAAAGCTAAGCTCATAGGCATGCTTGATGAGGTGGAGCAGAAGTACAGACAATATCATCAACAAATGCAAGGAGTGGTGAGTTGTTTTGAGCAGGCAGCAGGTTTGGGGTCAGCCAAATCTTACGCTTCACTCGCACTTGAGACAATTTCAAAGCAATTCCGGTGCTTAAAAGATGCAATTTGTGCACAAATAAAAGCGACAGGGAAAAGCTTAGGAGAAGAAGAAAATTGGTTGGGTTCAAAAATTGAAGGGTCTTCAAGATTGAGATACGTTGATCATCATTTAAGGCAGCAAAGAGCTTTGCAACAATTGGGAATGATTCAACACAATACTTGGAGACCACAAAGAGGTTTGCCTGAACGTGCTGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTCCTTCATCCCTATCCCAAGGATTCAGACAAGATTATTCTCGCCAAACAAACCGGACTCACAAGGAGCCAAGTATCGAATTGGTTTATAAATGCAAGAGTTCGTCTATGGAAGCCAATGGTTGAAGAAATGTACTTGGAGGAAATCAAAGAGCAAGAACAAAACGGGGATTCCCAAGACATCATTAGAGGAGGAGATCATCATCATCATCATCAAAGCAATAACAACAATAATAATAGTAATAATGATCCACAATATTCCAAGACAGAAAATTTGATGAACAACAACAACCCTTCCCATTCTTCAATCTCATCACCCTCAATGTTAGGAATAGGATCAACGATGGGCGGCTTCAACCTCGTACGACCGTCCTCCGACAATAACATTCTTTCAAGTCCCAAAAAACCAAGGACCACCACCAGTAGCAGTACAGCCACAATCAACAACAACAACCTGCCCGAAACCCCATCCTCAAAATCCATGCTTTTAAGAGACAATATTGTTCATGATCATCATAGGGGTAGTTTTGGTAATTCCAATACATACCCGGTTGGTGAAATTGGCTCAACCTTCAATTCTGAGCTTTTAACACCAAGATTTCATGCAAATGGAGTCTCTCTCACTCTTGCCCTTCCCCATAATAGTAATTCAGATCATCTCTCTCTTTCAGCCAACCAACCAAATTACCATCACCTATCCTCCAACCCAAATCTTCACTTGGGCAGATCAAGGCTTGATATCACCAATAATCATCATCCCGGACCACCCAATTTCTCCGACGTCAATCCTGCTGCCCCCCCACCGCCACATTCCGCTTACGACCACGTTGAAATGCAAACCACCAAAAGGTTCGCCGCCCAATTGTTGCCGGATTTTGTTGCCTGA 2082 46.4 MATYFHGGSEIQANSDGIHTLYLMNPNYVPYSDTHSQTPPNMLFLNSSSTHALNPSTLPHAPPSNNHFVGIPLPTTDNPRPSYHEISTLHRMPPHRLHYNLWAPMDQQPHHGISGDSADLTFRRPTTQQGLSLSLSSQQSLYRTLSAEQEIQGGGGGAPSGEEIRVSGNSPTSVSVVSSGITGAQSVILGSKYLKAAQELLDEVVHVGKGNFKSDKGDGTKDKMKMKKESTATIGGDPSVSVGGGESTSKPVAELSTAQRQDLQMKKAKLIGMLDEVEQKYRQYHQQMQGVVSCFEQAAGLGSAKSYASLALETISKQFRCLKDAICAQIKATGKSLGEEENWLGSKIEGSSRLRYVDHHLRQQRALQQLGMIQHNTWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKIILAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEIKEQEQNGDSQDIIRGGDHHHHHQSNNNNNNSNNDPQYSKTENLMNNNNPSHSSISSPSMLGIGSTMGGFNLVRPSSDNNILSSPKKPRTTTSSSTATINNNNLPETPSSKSMLLRDNIVHDHHRGSFGNSNTYPVGEIGSTFNSELLTPRFHANGVSLTLALPHNSNSDHLSLSANQPNYHHLSSNPNLHLGRSRLDITNNHHPGPPNFSDVNPAAPPPPHSAYDHVEMQTTKRFAAQLLPDFVA 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36351654 36355055 + CcPI632755_02g024000.1 Cco02g2400 173157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2400 693 Gene3D - 381 459 - -
Cco02g2400 693 MobiDBLite consensus disorder prediction 450 472 - -
Cco02g2400 693 MobiDBLite consensus disorder prediction 473 557 - -
Cco02g2400 693 MobiDBLite consensus disorder prediction 149 170 - -
Cco02g2400 693 SUPERFAMILY Homeodomain-like 379 444 IPR009057 -
Cco02g2400 693 ProSiteProfiles 'Homeobox' domain profile. 375 438 IPR001356 GO:0003677(InterPro)
Cco02g2400 693 MobiDBLite consensus disorder prediction 211 250 - -
Cco02g2400 693 Pfam Associated with HOX 187 326 IPR006563 -
Cco02g2400 693 MobiDBLite consensus disorder prediction 234 250 - -
Cco02g2400 693 Coils Coil 260 287 - -
Cco02g2400 693 SMART prehox3 182 328 IPR006563 -
Cco02g2400 693 FunFam BEL1-like homeodomain protein 9 381 443 - -
Cco02g2400 693 Pfam Homeobox KN domain 395 434 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco02g2400 693 MobiDBLite consensus disorder prediction 450 557 - -
Cco02g2400 693 MobiDBLite consensus disorder prediction 645 666 - -
Cco02g2400 693 SMART HOX_1 378 442 IPR001356 GO:0003677(InterPro)
Cco02g2400 693 CDD homeodomain 378 439 IPR001356 GO:0003677(InterPro)
Cco02g2400 693 MobiDBLite consensus disorder prediction 211 230 - -
Cco02g2400 693 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 138 489 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2400 Cco-Chr2:36351654 Cco11g0420 Cco-Chr11:4344386 7.00E-81 dispersed
Cco02g1393 Cco-Chr2:26181962 Cco02g2400 Cco-Chr2:36351654 8.90E-70 transposed
Cco10g1818 Cco-Chr10:31809157 Cco02g2400 Cco-Chr2:36351654 4.60E-144 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58865 PF07526 POX 3.80E-46 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2400 - - - 0.0