Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2409 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAATATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGCAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAGAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 42.86 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36471252 36477161 - CcPI632755_02g024090.1 Cco02g2409 173166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2409 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cco02g2409 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cco02g2409 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cco02g2409 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cco02g2409 174 MobiDBLite consensus disorder prediction 58 96 - -
Cco02g2409 174 CDD HMG-box_SF 119 155 - -
Cco02g2409 174 MobiDBLite consensus disorder prediction 58 121 - -
Cco02g2409 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cco02g2409 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0399 Cco-Chr1:3954180 Cco02g2409 Cco-Chr2:36471252 5.30E-44 dispersed
Cco02g2409 Cco-Chr2:36471252 Cco06g1303 Cco-Chr6:23255525 1.10E-46 dispersed
Cco02g2409 Cco-Chr2:36471252 Cco11g0329 Cco-Chr11:3311911 1.10E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58866 PF04690 YABBY 3.50E-75 CL0114 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2409 K25796 - csv:101222154 324.324