Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2409 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAATATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGCAAGGACAGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAGAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 42.86 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36471252 36477161 - CcPI632755_02g024090.1 Cco02g2409 173166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2409 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cco02g2409 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cco02g2409 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cco02g2409 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cco02g2409 174 MobiDBLite consensus disorder prediction 58 96 - -
Cco02g2409 174 CDD HMG-box_SF 119 155 - -
Cco02g2409 174 MobiDBLite consensus disorder prediction 58 121 - -
Cco02g2409 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cco02g2409 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2409 K25796 - - csv:101222154 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0399 Cco-Chr1:3954180 Cco02g2409 Cco-Chr2:36471252 5.30E-44 dispersed
Cco02g2409 Cco-Chr2:36471252 Cco06g1303 Cco-Chr6:23255525 1.10E-46 dispersed
Cco02g2409 Cco-Chr2:36471252 Cco11g0329 Cco-Chr11:3311911 1.10E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g2631 . 65 233 C2C2-YABBY Transcription Factor Family AT1G69180 55.2 8.6e-47 183.7
Cco05g2647 . 65 222 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 4.0e-44 174.9
Cco01g0399 . 82 242 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cco02g2409 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cco01g0399 . 38 232 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 1.5e-43 172.9
Cco06g1303 . 6 178 C2C2-YABBY Transcription Factor Family AT1G08465 54.2 3.8e-42 168.3
Cco11g0329 . 5 180 C2C2-YABBY Transcription Factor Family AT1G08465 50.3 7.2e-41 164.1
Cco10g0299 . 19 194 C2C2-YABBY Transcription Factor Family AT1G08465 52.3 3.0e-39 158.7
Cco01g0399 . 49 241 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 4.3e-50 194.9
Cco05g2813 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 54.3 5.1e-40 161.8
Cco06g1303 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 71.0 1.0e-62 236.5
Cco11g0329 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 71.3 4.3e-61 231.1
Cco02g2409 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cco01g0399 . 40 204 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.2e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58866 PF04690 YABBY 3.50E-75 CL0114 Cco TF