Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2410 ATGTATAAAACCACATTAAATAGTGTTGTCATCGAGGGTCTCATTACAAGTGTTTTGTACGACACCCGGCCTTCACCCGCCAGAATCCTCGAGCCATTGCAATCTCCTTCTAGCTTCCAAGGCACGGAAGTTGCCGGCGATCTTCGACCAAGACGAACCGAAAGAAACTGCCATGTCGATTCGAACTTCTCCACATTTCCGAAAGCGAGCGGTGGAAATTTCGCTCGCGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCAACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGATCAAAGAAAGCAAAACCTGCTCCAAGCAACTTAGAGAAATCCGCTTCAGCTGAACTACAGTCCGGGAAAACACGGCGGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCGATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGATCACCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATGACAATGGCGATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTGAAGCCTAGTGGAAGAGGTAAGGGAGGAAGGGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAGTTATCTACTATGTGATGAAGATATTGGTGGCCGAAAGTCTTCCAAAGCAAAAGAGCTGGGAACCGGTTTTCTCACTGAAGATGGCTTATTTGACATGATCCGTGCATCGGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCGCAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAAATCTCTAACATAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAGGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTTTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAGTATGATGATATTCGCCAACGGCTTCTGGGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGACGAAAGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATCGCCCATACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTATAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTACACACGCTGCCTAAGGACGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAGCCCCCGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCCGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCGACTGAGGATGCAGTTGAAGGTGCTGTTGGAGACACATTGGCAGAAAGTGACGACGAAAACTCTTTGGACAATGAGGACGCAGAAGACTCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCCGGTGGCAGAGGACGAGGAGATAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTCGACATTTCGGATGATGATTCACCCAACGGATGA 3279 43.61 MYKTTLNSVVIEGLITSVLYDTRPSPARILEPLQSPSSFQGTEVAGDLRPRRTERNCHVDSNFSTFPKASGGNFAREPSRTVNLTVEWRFLPFALRLAFNNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLEKSASAELQSGKTRRSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIDDNGDDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTDSSLKPSGRGKGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPRKDLTASASPAKQKSRTAEISNITWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFLDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCFILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMDLIAHTAESIADGDIINVQIRRHRQWQLSQSSCIASCIIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAVGDTLAESDDENSLDNEDAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGDRSSQASEKKGGRGSEMRPSLRHGAVDISDDDSPNG 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36493878 36507749 + CcPI632755_02g024100.1 Cco02g2410 173167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2410 1092 MobiDBLite consensus disorder prediction 164 205 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 258 273 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 138 163 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 998 1018 - -
Cco02g2410 1092 Gene3D BRCT domain 301 403 IPR036420 -
Cco02g2410 1092 FunFam Replication factor C subunit 1 461 649 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 1037 1057 - -
Cco02g2410 1092 ProSiteProfiles BRCT domain profile. 324 402 IPR001357 -
Cco02g2410 1092 SUPERFAMILY BRCT domain 324 403 IPR036420 -
Cco02g2410 1092 Pfam Replication factor RFC1 C terminal domain 790 952 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Cco02g2410 1092 MobiDBLite consensus disorder prediction 405 457 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 998 1012 - -
Cco02g2410 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 710 IPR027417 -
Cco02g2410 1092 SMART BRCT_7 326 404 IPR001357 -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 120 324 - -
Cco02g2410 1092 SMART AAA_5 513 651 IPR003593 GO:0016887(InterPro)
Cco02g2410 1092 MobiDBLite consensus disorder prediction 1037 1092 - -
Cco02g2410 1092 Pfam BRCA1 C Terminus (BRCT) domain 326 401 IPR001357 -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 308 323 - -
Cco02g2410 1092 SUPERFAMILY post-AAA+ oligomerization domain-like 721 866 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cco02g2410 1092 PIRSF RFC1 106 1053 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Cco02g2410 1092 CDD BRCT_RFC1 324 402 - -
Cco02g2410 1092 FunFam Replication factor C subunit 1 650 721 - -
Cco02g2410 1092 Pfam ATPase family associated with various cellular activities (AAA) 517 633 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco02g2410 1092 MobiDBLite consensus disorder prediction 1058 1073 - -
Cco02g2410 1092 Gene3D - 650 720 - -
Cco02g2410 1092 Gene3D - 722 832 - -
Cco02g2410 1092 FunFam Replication factor C subunit 1 722 831 - -
Cco02g2410 1092 FunFam Replication factor C subunit 1 300 403 - -
Cco02g2410 1092 Gene3D - 461 649 IPR027417 -
Cco02g2410 1092 CDD HLD_clamp_RFC 650 708 IPR047854 -
Cco02g2410 1092 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 171 1036 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Cco02g2410 1092 CDD AAA 502 650 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 229 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2410 Cco-Chr2:36493878 Cco05g0399 Cco-Chr5:3269726 1.70E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2410 K10754 - csv:101204361 1652.88