Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2410 ATGTATAAAACCACATTAAATAGTGTTGTCATCGAGGGTCTCATTACAAGTGTTTTGTACGACACCCGGCCTTCACCCGCCAGAATCCTCGAGCCATTGCAATCTCCTTCTAGCTTCCAAGGCACGGAAGTTGCCGGCGATCTTCGACCAAGACGAACCGAAAGAAACTGCCATGTCGATTCGAACTTCTCCACATTTCCGAAAGCGAGCGGTGGAAATTTCGCTCGCGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCAACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGATCAAAGAAAGCAAAACCTGCTCCAAGCAACTTAGAGAAATCCGCTTCAGCTGAACTACAGTCCGGGAAAACACGGCGGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCGATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGATCACCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATGACAATGGCGATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTGAAGCCTAGTGGAAGAGGTAAGGGAGGAAGGGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAGTTATCTACTATGTGATGAAGATATTGGTGGCCGAAAGTCTTCCAAAGCAAAAGAGCTGGGAACCGGTTTTCTCACTGAAGATGGCTTATTTGACATGATCCGTGCATCGGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCGCAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCGAACAGCTGAAATCTCTAACATAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCACTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAGGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTTTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAAAGATTGATTCAAGTTGCAAATGCAGAAGGCCTTCAAGTTAATGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGATATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGTCAGTTATTAAGTATGATGATATTCGCCAACGGCTTCTGGGCAGTATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGACGAAAGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATCGCCCATACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTATAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTACACACGCTGCCTAAGGACGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAGCCCCCGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCCGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCGACTGAGGATGCAGTTGAAGGTGCTGTTGGAGACACATTGGCAGAAAGTGACGACGAAAACTCTTTGGACAATGAGGACGCAGAAGACTCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCCGGTGGCAGAGGACGAGGAGATAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTCGACATTTCGGATGATGATTCACCCAACGGATGA 3279 43.61 MYKTTLNSVVIEGLITSVLYDTRPSPARILEPLQSPSSFQGTEVAGDLRPRRTERNCHVDSNFSTFPKASGGNFAREPSRTVNLTVEWRFLPFALRLAFNNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLEKSASAELQSGKTRRSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIDDNGDDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTDSSLKPSGRGKGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTSYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPRKDLTASASPAKQKSRTAEISNITWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFLDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCFILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMSVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMDLIAHTAESIADGDIINVQIRRHRQWQLSQSSCIASCIIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVAPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAVGDTLAESDDENSLDNEDAEDSTNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGDRSSQASEKKGGRGSEMRPSLRHGAVDISDDDSPNG 1092
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36493878 36507749 + CcPI632755_02g024100.1 Cco02g2410 173167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2410 1092 MobiDBLite consensus disorder prediction 164 205 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 258 273 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 138 163 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 998 1018 - -
Cco02g2410 1092 Gene3D BRCT domain 301 403 IPR036420 -
Cco02g2410 1092 FunFam Replication factor C subunit 1 461 649 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 1037 1057 - -
Cco02g2410 1092 ProSiteProfiles BRCT domain profile. 324 402 IPR001357 -
Cco02g2410 1092 SUPERFAMILY BRCT domain 324 403 IPR036420 -
Cco02g2410 1092 Pfam Replication factor RFC1 C terminal domain 790 952 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Cco02g2410 1092 MobiDBLite consensus disorder prediction 405 457 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 998 1012 - -
Cco02g2410 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 710 IPR027417 -
Cco02g2410 1092 SMART BRCT_7 326 404 IPR001357 -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 120 324 - -
Cco02g2410 1092 SMART AAA_5 513 651 IPR003593 GO:0016887(InterPro)
Cco02g2410 1092 MobiDBLite consensus disorder prediction 1037 1092 - -
Cco02g2410 1092 Pfam BRCA1 C Terminus (BRCT) domain 326 401 IPR001357 -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 308 323 - -
Cco02g2410 1092 SUPERFAMILY post-AAA+ oligomerization domain-like 721 866 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cco02g2410 1092 PIRSF RFC1 106 1053 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Cco02g2410 1092 CDD BRCT_RFC1 324 402 - -
Cco02g2410 1092 FunFam Replication factor C subunit 1 650 721 - -
Cco02g2410 1092 Pfam ATPase family associated with various cellular activities (AAA) 517 633 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cco02g2410 1092 MobiDBLite consensus disorder prediction 1058 1073 - -
Cco02g2410 1092 Gene3D - 650 720 - -
Cco02g2410 1092 Gene3D - 722 832 - -
Cco02g2410 1092 FunFam Replication factor C subunit 1 722 831 - -
Cco02g2410 1092 FunFam Replication factor C subunit 1 300 403 - -
Cco02g2410 1092 Gene3D - 461 649 IPR027417 -
Cco02g2410 1092 CDD HLD_clamp_RFC 650 708 IPR047854 -
Cco02g2410 1092 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 171 1036 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Cco02g2410 1092 CDD AAA 502 650 - -
Cco02g2410 1092 MobiDBLite consensus disorder prediction 229 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2410 K10754 - - csv:101204361 1652.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2410 Cco-Chr2:36493878 Cco05g0399 Cco-Chr5:3269726 1.70E-20 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g0051 . 106 692 Core DNA Replication Machinery Family AT4G14700 65.4 1.5e-220 763.1
Cco08g0051 . 20 692 Core DNA Replication Machinery Family AT4G12620 61.6 4.0e-229 791.6
Cco08g1757 . 65 436 Core DNA Replication Machinery Family AT2G37560 57.3 2.2e-123 439.1
Cco07g0493 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.5e-152 535.0
Cco06g0369 . 3 534 Core DNA Replication Machinery Family AT4G29910 56.9 3.3e-169 592.0
Cco11g0902 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.5 3.6e-92 335.1
Cco09g2466 . 68 864 Core DNA Replication Machinery Family AT1G79150 58.7 1.4e-248 856.3
Cco10g1289 . 8 939 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1348.6
Cco04g2230 . 102 676 Core DNA Replication Machinery Family AT5G46280 80.9 1.8e-268 921.8
Cco02g0511 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1146.3
Cco11g0380 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.1
Cco04g2395 . 7 818 Core DNA Replication Machinery Family AT5G44635 71.9 0.0e+00 1153.7
Cco09g0502 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cco02g2101 . 55 521 Core DNA Replication Machinery Family AT2G29680 62.1 3.1e-163 572.0
Cco02g2101 . 37 482 Core DNA Replication Machinery Family AT1G07270 59.2 7.5e-143 504.2
Cco09g0862 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cco10g2049 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.5 0.0e+00 1078.2
Cco09g1753 . 44 464 Core DNA Replication Machinery Family AT2G14050 82.4 4.2e-197 684.9
Cco09g1752 . 9 237 Core DNA Replication Machinery Family AT2G14050 69.0 7.9e-87 318.5
Cco02g1292 . 1955 2365 Core DNA Replication Machinery Family AT2G20980 56.1 7.0e-118 421.0
Cco09g0260 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 2.3e-72 268.9
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT1G19080 69.0 3.9e-71 264.6
Cco11g0627 . 1 184 Core DNA Replication Machinery Family AT3G55490 69.0 3.9e-71 264.6
Cco05g0179 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 8.8e-50 193.7
Cco02g1335 . 1 1521 Core DNA Replication Machinery Family AT5G67100 59.0 0.0e+00 1711.8
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco08g0215 . 144 587 Core DNA Replication Machinery Family AT5G41880 65.0 2.9e-176 615.1
Cco04g1267 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.6 0.0e+00 1794.6
Cco10g1734 . 1 441 Core DNA Replication Machinery Family AT2G42120 72.1 1.6e-192 669.1
Cco06g0207 . 1 446 Core DNA Replication Machinery Family AT1G67320 63.6 4.2e-181 631.3
Cco01g0571 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.0 3.2e-37 151.4
Cco02g2358 . 1 1866 Core DNA Replication Machinery Family AT1G08260 74.8 0.0e+00 2799.6
Cco09g2253 . 1 1999 Core DNA Replication Machinery Family AT1G08260 69.1 0.0e+00 2770.3
Cco09g2253 . 1 2090 Core DNA Replication Machinery Family AT2G27120 66.0 0.0e+00 2739.1
Cco02g2358 . 25 1861 Core DNA Replication Machinery Family AT2G27120 71.9 0.0e+00 2632.4
Cco01g1863 . 7 496 Core DNA Replication Machinery Family AT5G22110 63.0 4.9e-169 591.3
Cco02g2410 . 108 1032 Core DNA Replication Machinery Family AT5G22010 63.3 2.4e-307 1051.6
Cco10g0353 . 3 332 Core DNA Replication Machinery Family AT1G63160 91.5 2.2e-173 605.1
Cco04g0633 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cco11g1646 . 1 334 Core DNA Replication Machinery Family AT1G21690 82.1 3.3e-153 538.1
Cco08g0722 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 4.6e-156 547.7
Cco11g0176 . 26 607 Core DNA Replication Machinery Family AT2G06510 68.0 4.0e-245 844.3
Cco10g0112 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.1 2.4e-194 675.6
Cco06g1757 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 2.9e-248 854.7
Cco10g0112 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.5 2.8e-225 778.9
Cco06g1757 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 3.0e-240 828.2
Cco10g0112 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.5 1.1e-223 773.5
Cco03g1856 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.7 2.7e-189 658.3
Cco05g0323 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.4 6.2e-299 1023.8
Cco07g1648 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 2.3e-115 412.1
Cco02g2308 . 2 762 Core DNA Replication Machinery Family AT1G08130 68.8 4.8e-296 1013.8
Cco02g2308 . 162 762 Core DNA Replication Machinery Family AT1G49250 68.6 1.1e-240 829.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33