Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2416 ATGGCGGCTCGGCCTGTTGTTCCTCAGCGACAACTTAGAATCAGAGATGAAGGTAAGCCGAAGGTCGTAGCGGTGGAAGGAAGAACAAGACGAATTCTTAAGGATATAGGAAATCTAGTGCCTGATCGAGCCATTGAAGGGAAACCCGGAACTCAACCAGCAGAGAAGAATAAGAAGGCAATCACCCAAAAGGTGGATGGAGGAGTTGGGAAGGGAGTCAATGCAACGAAGGCTGGAGTAACTGAGAAACCGAAACTGAAGACTGTAATCCGCTCCAGCGACGAGAGATATATAAGCAACGTCAAAGATACTAAATCAAAGGACAAGAATAAGAGATCTCTGAGTTCAACCCTTAGTGCCAGAAGCAAGGCTGCTTGTGGACTCACCAACAAACCACTGGATTCTTCAGTAGCTAATATTGATGAAGCAGATGCCAACAATGAATTAGCCGTAGTAGAATACATTGATGACATGTATAAGTTTTACAAGCTTGCAGAAGATGAGAGTAGAGTATCAGATTACATGGGAGCACAGCCAGATTTGAATGCTAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTTCATCGAAAGTTTGAACTGATGCCGGAAACCCTTTACCTCACTGTAAACATCGTCGACCGATTCCTTTCCTTAAAGACTGTACCTAGGAAGGAACTTCAATTGCTTGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTAAGTATATCTGCAAATACTTATCAAAGAGAACAAATTTTGGTGATGGAGAAAGTAATCTTGGGTAGGTTGGAATGGCTTTTAACAGTTCCTACCCCTTATGTTTTTCTTGTTCGATATGTCAAGGCTTCTGAGCCATCTGATGATGAGATGGAGAATATGGTATTTTTTCTAGCTGAGCTTGGTCTGATGAACTATCCAATAGCAATATCATACAGCCCTTCAATGATTGCTTCAGCGGCTGTTTATGCTGCAAGATGCACACTTGAAAAGAGCCCAATCTGGACAGCAACTTTGCAACACCATACAGGCTATGTTGAAGAAGAGTTGAAGGAATGTGCAAAACTCCTTGTGAACTTACACCGTGGAGCTGTAGATTCAAAACTCAAGGCTGTATACAGAAAATATTCAAGTCCCGATCGCCGTGCCGTTTCTCTTCTTCCTCCAGCTAAAAGCTTGACTCCAGATTGTAGTCCAGAAGTATGA 1245 42.57 MAARPVVPQRQLRIRDEGKPKVVAVEGRTRRILKDIGNLVPDRAIEGKPGTQPAEKNKKAITQKVDGGVGKGVNATKAGVTEKPKLKTVIRSSDERYISNVKDTKSKDKNKRSLSSTLSARSKAACGLTNKPLDSSVANIDEADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGAQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRKELQLLGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEMENMVFFLAELGLMNYPIAISYSPSMIASAAVYAARCTLEKSPIWTATLQHHTGYVEEELKECAKLLVNLHRGAVDSKLKAVYRKYSSPDRRAVSLLPPAKSLTPDCSPEV 414
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 36566029 36568314 + CcPI632755_02g024160.1 Cco02g2416 173173
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2416 414 PANTHER CYCLINS 136 391 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco02g2416 414 ProSitePatterns Cyclins signature. 186 217 IPR048258 -
Cco02g2416 414 CDD CYCLIN_AtCycB-like_rpt2 284 402 - -
Cco02g2416 414 PIRSF Cyclin_A_B_D_E 5 413 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cco02g2416 414 SMART cyclin_7 191 275 IPR013763 -
Cco02g2416 414 SMART cyclin_7 288 372 IPR013763 -
Cco02g2416 414 SMART Cyclin_C_2 284 403 IPR004367 -
Cco02g2416 414 Pfam Cyclin, N-terminal domain 157 281 IPR006671 -
Cco02g2416 414 SUPERFAMILY Cyclin-like 146 279 IPR036915 -
Cco02g2416 414 CDD CYCLIN_AtCycB-like_rpt1 135 279 - -
Cco02g2416 414 Gene3D - 157 399 - -
Cco02g2416 414 SUPERFAMILY Cyclin-like 285 406 IPR036915 -
Cco02g2416 414 Gene3D - 171 282 - -
Cco02g2416 414 FunFam G2/mitotic-specific cyclin 170 278 - -
Cco02g2416 414 Pfam Cyclin, C-terminal domain 284 402 IPR004367 -
Cco02g2416 414 FunFam G2/mitotic-specific cyclin-1 279 398 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2416 Cco-Chr2:36566029 Cco04g0704 Cco-Chr4:21767290 1.30E-111 dispersed
Cco02g2416 Cco-Chr2:36566029 Cco04g1862 Cco-Chr4:33292378 1.30E-66 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2416 K21777 - csv:101222873 731.48