Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g2416 | ATGGCGGCTCGGCCTGTTGTTCCTCAGCGACAACTTAGAATCAGAGATGAAGGTAAGCCGAAGGTCGTAGCGGTGGAAGGAAGAACAAGACGAATTCTTAAGGATATAGGAAATCTAGTGCCTGATCGAGCCATTGAAGGGAAACCCGGAACTCAACCAGCAGAGAAGAATAAGAAGGCAATCACCCAAAAGGTGGATGGAGGAGTTGGGAAGGGAGTCAATGCAACGAAGGCTGGAGTAACTGAGAAACCGAAACTGAAGACTGTAATCCGCTCCAGCGACGAGAGATATATAAGCAACGTCAAAGATACTAAATCAAAGGACAAGAATAAGAGATCTCTGAGTTCAACCCTTAGTGCCAGAAGCAAGGCTGCTTGTGGACTCACCAACAAACCACTGGATTCTTCAGTAGCTAATATTGATGAAGCAGATGCCAACAATGAATTAGCCGTAGTAGAATACATTGATGACATGTATAAGTTTTACAAGCTTGCAGAAGATGAGAGTAGAGTATCAGATTACATGGGAGCACAGCCAGATTTGAATGCTAAGATGAGATCCATTCTCATAGATTGGTTGATAGAAGTTCATCGAAAGTTTGAACTGATGCCGGAAACCCTTTACCTCACTGTAAACATCGTCGACCGATTCCTTTCCTTAAAGACTGTACCTAGGAAGGAACTTCAATTGCTTGGTATCAGCTCTATGCTGATAGCATGCAAATATGAAGAGATTTGGGCCCCAGAGGTCAATGACTTTGTAAGTATATCTGCAAATACTTATCAAAGAGAACAAATTTTGGTGATGGAGAAAGTAATCTTGGGTAGGTTGGAATGGCTTTTAACAGTTCCTACCCCTTATGTTTTTCTTGTTCGATATGTCAAGGCTTCTGAGCCATCTGATGATGAGATGGAGAATATGGTATTTTTTCTAGCTGAGCTTGGTCTGATGAACTATCCAATAGCAATATCATACAGCCCTTCAATGATTGCTTCAGCGGCTGTTTATGCTGCAAGATGCACACTTGAAAAGAGCCCAATCTGGACAGCAACTTTGCAACACCATACAGGCTATGTTGAAGAAGAGTTGAAGGAATGTGCAAAACTCCTTGTGAACTTACACCGTGGAGCTGTAGATTCAAAACTCAAGGCTGTATACAGAAAATATTCAAGTCCCGATCGCCGTGCCGTTTCTCTTCTTCCTCCAGCTAAAAGCTTGACTCCAGATTGTAGTCCAGAAGTATGA | 1245 | 42.57 | MAARPVVPQRQLRIRDEGKPKVVAVEGRTRRILKDIGNLVPDRAIEGKPGTQPAEKNKKAITQKVDGGVGKGVNATKAGVTEKPKLKTVIRSSDERYISNVKDTKSKDKNKRSLSSTLSARSKAACGLTNKPLDSSVANIDEADANNELAVVEYIDDMYKFYKLAEDESRVSDYMGAQPDLNAKMRSILIDWLIEVHRKFELMPETLYLTVNIVDRFLSLKTVPRKELQLLGISSMLIACKYEEIWAPEVNDFVSISANTYQREQILVMEKVILGRLEWLLTVPTPYVFLVRYVKASEPSDDEMENMVFFLAELGLMNYPIAISYSPSMIASAAVYAARCTLEKSPIWTATLQHHTGYVEEELKECAKLLVNLHRGAVDSKLKAVYRKYSSPDRRAVSLLPPAKSLTPDCSPEV | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 36566029 | 36568314 | + | CcPI632755_02g024160.1 | Cco02g2416 | 173173 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g2416 | 414 | PANTHER | CYCLINS | 136 | 391 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
| Cco02g2416 | 414 | ProSitePatterns | Cyclins signature. | 186 | 217 | IPR048258 | - | |
| Cco02g2416 | 414 | CDD | CYCLIN_AtCycB-like_rpt2 | 284 | 402 | - | - | |
| Cco02g2416 | 414 | PIRSF | Cyclin_A_B_D_E | 5 | 413 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
| Cco02g2416 | 414 | SMART | cyclin_7 | 191 | 275 | IPR013763 | - | |
| Cco02g2416 | 414 | SMART | cyclin_7 | 288 | 372 | IPR013763 | - | |
| Cco02g2416 | 414 | SMART | Cyclin_C_2 | 284 | 403 | IPR004367 | - | |
| Cco02g2416 | 414 | Pfam | Cyclin, N-terminal domain | 157 | 281 | IPR006671 | - | |
| Cco02g2416 | 414 | SUPERFAMILY | Cyclin-like | 146 | 279 | IPR036915 | - | |
| Cco02g2416 | 414 | CDD | CYCLIN_AtCycB-like_rpt1 | 135 | 279 | - | - | |
| Cco02g2416 | 414 | Gene3D | - | 157 | 399 | - | - | |
| Cco02g2416 | 414 | SUPERFAMILY | Cyclin-like | 285 | 406 | IPR036915 | - | |
| Cco02g2416 | 414 | Gene3D | - | 171 | 282 | - | - | |
| Cco02g2416 | 414 | FunFam | G2/mitotic-specific cyclin | 170 | 278 | - | - | |
| Cco02g2416 | 414 | Pfam | Cyclin, C-terminal domain | 284 | 402 | IPR004367 | - | |
| Cco02g2416 | 414 | FunFam | G2/mitotic-specific cyclin-1 | 279 | 398 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g2416 | Cco-Chr2:36566029 | Cco04g0704 | Cco-Chr4:21767290 | 1.30E-111 | dispersed | |
| Cco02g2416 | Cco-Chr2:36566029 | Cco04g1862 | Cco-Chr4:33292378 | 1.30E-66 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g2416 | K21777 | - | csv:101222873 | 731.48 |