Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2417 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTAATTTTCCTAGTAGCTTTTTCAGCCATCTTCGGCGCATCGCCGCCGGTTCCGACCGAAAAGTCGAAATTAGACAGCTGGTTTTTAGAAAATGTGAAGCCCTTCACTGATCGTAAGGCGGAGCTTGATCCGACGCTTGTGATTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGGCCAACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAACTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTACTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTAATTCATCCCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACTCTTTGCGACGACGACGGTTTGCATCTCTACAAAGATTGCTTCATTCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACGGCCCATTCAAGGGAACAGGAATCGGACGGTAGTGGATATTCGTTTGTGCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCGAGATCTAGGGTTGTCTTCGCCTAG 798 44.61 MKYCIDAVGLTRLVIFLVAFSAIFGASPPVPTEKSKLDSWFLENVKPFTDRKAELDPTLVIAEENATVVKVRANGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSTNNMPKLTFDGDANSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFA 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36571656 36574544 - CcPI632755_02g024170.1 Cco02g2417 173174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2417 265 Pfam Pectinesterase 70 128 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco02g2417 265 Pfam Pectinesterase 149 264 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco02g2417 265 SUPERFAMILY Pectin lyase-like 66 264 IPR011050 -
Cco02g2417 265 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 139 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cco02g2417 265 Gene3D - 62 265 IPR012334 -
Cco02g2417 265 ProSitePatterns Pectinesterase signature 2. 190 199 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2417 Cco-Chr2:36571656 Cco02g2421 Cco-Chr2:36586687 4.20E-143 dispersed
Cco02g2417 Cco-Chr2:36571656 Cco02g2420 Cco-Chr2:36581949 4.20E-143 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2417 K01051 - csv:101205095 414.846