Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2420 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTAATTTTCCTAGCAACTTTTTCAGCCATCTTCTGCGCATCGCCGCCGGTTCCAACCGAAAAGTCGAAATTAGACAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCCCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACTCTTTGCGACGATGACGGTTTGCATCTCTACAAAGATTGTTTCATTCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACGGCCCATTCAAGGGAACAGGAATCGGACGGTAGTGGATATTCGTTCGTGCATTGTAGCATTACGGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGGTCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCTGGTTACGATGCCACGGTTTTGTTCGGAGAATATAAGTGTTCGGGACCGGGATCGGAGCCGAGCGGACGTGTAAAATACAGCAAGCAATTGAGTGATGTAGAAGTGAAACCGTTCATTAGTCTTGGTTACGTGCAGAGCGAGAAGTGGCTGCTTCCTCCTCCCAATCCTCAAGCTTAA 1107 45.89 MKYCIDAVGLTRLVIFLATFSAIFCASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENATVVKVRADGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDVEVKPFISLGYVQSEKWLLPPPNPQA 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36581949 36583717 - CcPI632755_02g024200.1 Cco02g2420 173177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2420 368 FunFam Pectinesterase 64 362 - -
Cco02g2420 368 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cco02g2420 368 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 35 360 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cco02g2420 368 Pfam Pectinesterase 69 354 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco02g2420 368 Gene3D - 62 363 IPR012334 -
Cco02g2420 368 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2420 Cco-Chr2:36581949 Cco03g1534 Cco-Chr3:29970862 1.60E-108 dispersed
Cco02g2417 Cco-Chr2:36571656 Cco02g2420 Cco-Chr2:36581949 4.20E-143 proximal
Cco02g2420 Cco-Chr2:36581949 Cco02g2421 Cco-Chr2:36586687 1.00E-216 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2420 K01051 - csv:101205095 622.083