Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2421 ATGAAATATTGCATTGATGCCGTCGGACTTACAAGATTGGTAATTTTCCTAGCAACTTTTTCAGCCATCTTCTGCGCATCGCCGCCGGTTCCAACCGAAAAGTCGAAATTAGATAGCTGGTTTTCAGAAAATGTGAAGCCCTTCGCTGATCGTAAGGCGGAGCTTGATCCGGCGCTTGTGACTGCAGAAGAAAACGCCACCGTGGTTAAAGTAAGGGCCGACGGAAGTGGAGATTTCAAGACAATCACCGAAGCCATTAACAGCGTGCCAGCTGGCAACACGAGACGTGTAGTGATTTGGATTGGAGAAGGAGTTTATAAAGAGAAGCTTAAGATTGATAGAAATAAGCCTTTCGTTACTCTTTATGGCTCTCCTAATAATATGCCTAAATTGACCTTTGATGGCGATGCTGCCAAATACGGCACCGTTTACAGTGCAACCTTGATTGTTGAGTCTGATTATTTCACCGCCGCCAATCTCATCATTGAGAATTCATCCCCAAGGCCAGATGGGAAAAGAAAAGGAGCACAAGCATTAGCAGCAAGACTATTAGGGACTAAAGCGGCAGTTTACAATTGCAAATTCTATGGATTTCAAGATACTCTTTGCGACGATGACGGTTTGCATCTCTACAAAGATTGTTTCATTCAAGGCACCGTCGACTTCATTTTCGGAAAGGGAACATCTCTTTATTTGAATAGTCAATTGGATGTGGTGGGAGACGGAGGATTGGGAGTGATCACGGCCCATTCAAGGGAACAGGAATCGGACGGTAGTGGATATTCGTTCGTGCATTGTAGCATTACTGGAACTGGCGGCAAAAACACTTATTTGGGAAGAGCTTGGATGCCCAGGTCTAGGGTTGTCTTCGCCTACACTACAATGGCTGACATCATTCATTCCGAAGGCTGGAACGATATGAACCATGCTGGTTACGATGCCACGGTTTTGTTCGGAGAGTATAAGTGTTCGGGACCAGGATCGGAGCCGAGCGGACGTGTAAAATACAGCAAGCAATTGAGTGATGTAGAAGTGAAACCGTTCATTAGTCTTGGTTACGTGCAGAGCGAGAAGTGGCTGCTTCCTCCTCCCAATCCTCAAAATCGTGACTTGGGAGTATCGCGACCCTCACTTTCCGGCGAGCTGACACCTGATCCGTCGTTATCTTCTCCAGCGCCGGCGATATCAGGTCGTCACTTCTACTCCTCCATTCCCCCATCCTTCCCTTCAAACCCTAACCCTGATTTCGCTCTCACCGGGAGAATCTCCGACCCGAAAACCTCTGGTTTCACTCTAATCGTGAAGGTTCTTGCTTACAATCGCCTCGATTCCGTGTCCCGCTGCCTTCGGTCCATCGCCAATGCGGATTACCTCTCTGACCGCGTCCATCTCCATGTCTACATTGATCATTTTCCTCACGATGATGCTCATATCAAGCTCAACGAGTCGCATCGGATCTTGCAATTCGTTGATCAGTTTGTTTGGAATTTTGGGGAAAAGCTAGTGCATTATCGAACGGGGAACGTGGGTTTGCAAGCGCAGTGGTTGGAGGCTTGGTGGCCGAGCTCTGACAATGAGTTTGCATTCGTTGTGGAGGATGATCTGGAGTTGTCGCCGCTTTATTATAAGTTCCTGAGGAGTTTAATTCTGAATTATTATTATAATACTTCGAATTATGCTCCCTCGATATACGGGGCTTCGCTGCAGCGACCAAGGTTTGTTCCAGGTAAACATGGTAATAAAATAAGACTGGATGAAGGAACCAGAACTTTTTTGTACCAAATAGTTGGCACTTGGGGTCAGCTTCTCTTTCCAAGGCCTTGGAAGGAGTTTAGATTGTGGTATGATAAGCACAAGGCGACGGGCATCAAGCCAATACTTGATGGCATGGTGACGACAGGATGGTACAAGAAGCTGGGTGAAAGAATATGGACTCCTTGGTTTATTAAATTTATCCATTCTCGTGGCTATTTCAATATCTACACCAATTTCTTACATGAAAGAGCACTGAGTACGTCTCACAGGGATGCTGGTGTCAATTATGGGAAAACAGCTGGTCCTGATTCACACTTACTGGATGAAAGTTCACTCGATTTTAATCTCCTAGAGATGAAGCCTCTTACCAATCTGAAGTGGTATGATTTCTGCTTTAGAGAAGTAATTCCTCAAAGAATTGTTAAAAGCAAGAGTGAGCTTGTTTCTGTTCTTCACTCTGTTCAGAAACACAAAAACATAATCATAGTGAGTATATTTGGGGTTTCAGAGTCCACGATGAGGAATTTCCTTTGCCACTTTGAGAGGTTGAACATAAAGAACTATATTTTGTTGGGCCATGAATCTGAGTTACTCAATGATCTAACTAGAAGAGGACACCCAGTAGTTTATGCAGACCATTTTCTGAAGACTGTCAAAACTTTCAAATTTACAACTTTTGGAGGCACCACCTCTTCAGAACTGGTGAAGGTAGTTCTAGCAAAGTTCTACATTAGTAAGTCATGCTTAGAACTTGGGTACAATCCTGTGTTGGTAGATGGAAACATGCTTTTTGTCAATGGTGATCCATTCACAGACTTAAGTCTTGCTGACAATGTTGTTTCCGGGCAGAGCTTTGAACTTTTCTTCATTAAAAGCTCGTCCTCTGCTCAAAAGATGTGGACTAGTCACATGGTCGTCGAGGCCGAAGCCATGGTAGAGTCTTTGATGAGTAGAGGTTCCTCATCAAGAGATGGCATTAGTTTTGTAGGCATAGCAACTAAAGTATTAGAACAACATGGTGTTAAGTTCAAGACAGCTGAGGAGATGAGTTTTGGTGTGAATATTGGTAACAATCCTTCCAACACATCATTAGGTGATGGGAAAAGGTTGGTGTTTTGGCCAGTGGATATGGATATTAATGACGTACAAAAACGGCTCGAGGAGTTGGGTTTTTGGATTATTGATGCTGATCTTTCTTGCAAAGCTGTTTATTGTAATGGATTGTAG 2982 44.13 MKYCIDAVGLTRLVIFLATFSAIFCASPPVPTEKSKLDSWFSENVKPFADRKAELDPALVTAEENATVVKVRADGSGDFKTITEAINSVPAGNTRRVVIWIGEGVYKEKLKIDRNKPFVTLYGSPNNMPKLTFDGDAAKYGTVYSATLIVESDYFTAANLIIENSSPRPDGKRKGAQALAARLLGTKAAVYNCKFYGFQDTLCDDDGLHLYKDCFIQGTVDFIFGKGTSLYLNSQLDVVGDGGLGVITAHSREQESDGSGYSFVHCSITGTGGKNTYLGRAWMPRSRVVFAYTTMADIIHSEGWNDMNHAGYDATVLFGEYKCSGPGSEPSGRVKYSKQLSDVEVKPFISLGYVQSEKWLLPPPNPQNRDLGVSRPSLSGELTPDPSLSSPAPAISGRHFYSSIPPSFPSNPNPDFALTGRISDPKTSGFTLIVKVLAYNRLDSVSRCLRSIANADYLSDRVHLHVYIDHFPHDDAHIKLNESHRILQFVDQFVWNFGEKLVHYRTGNVGLQAQWLEAWWPSSDNEFAFVVEDDLELSPLYYKFLRSLILNYYYNTSNYAPSIYGASLQRPRFVPGKHGNKIRLDEGTRTFLYQIVGTWGQLLFPRPWKEFRLWYDKHKATGIKPILDGMVTTGWYKKLGERIWTPWFIKFIHSRGYFNIYTNFLHERALSTSHRDAGVNYGKTAGPDSHLLDESSLDFNLLEMKPLTNLKWYDFCFREVIPQRIVKSKSELVSVLHSVQKHKNIIIVSIFGVSESTMRNFLCHFERLNIKNYILLGHESELLNDLTRRGHPVVYADHFLKTVKTFKFTTFGGTTSSELVKVVLAKFYISKSCLELGYNPVLVDGNMLFVNGDPFTDLSLADNVVSGQSFELFFIKSSSSAQKMWTSHMVVEAEAMVESLMSRGSSSRDGISFVGIATKVLEQHGVKFKTAEEMSFGVNIGNNPSNTSLGDGKRLVFWPVDMDINDVQKRLEELGFWIIDADLSCKAVYCNGL 993
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36586687 36593953 + CcPI632755_02g024210.1 Cco02g2421 173178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2421 993 PANTHER OSJNBA0004B13.7 PROTEIN 431 987 - -
Cco02g2421 993 FunFam Pectinesterase 64 362 - -
Cco02g2421 993 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Cco02g2421 993 Gene3D - 63 364 IPR012334 -
Cco02g2421 993 Pfam Pectinesterase 69 354 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco02g2421 993 SUPERFAMILY Nucleotide-diphospho-sugar transferases 434 679 IPR029044 -
Cco02g2421 993 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 433 684 IPR029044 -
Cco02g2421 993 MobiDBLite consensus disorder prediction 361 389 - -
Cco02g2421 993 SUPERFAMILY Pectin lyase-like 66 361 IPR011050 -
Cco02g2421 993 MobiDBLite consensus disorder prediction 370 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1500 Cco-Chr1:26865101 Cco02g2421 Cco-Chr2:36586687 1.30E-26 dispersed
Cco02g2417 Cco-Chr2:36571656 Cco02g2421 Cco-Chr2:36586687 4.20E-143 dispersed
Cco02g2421 Cco-Chr2:36586687 Cco03g1534 Cco-Chr3:29970862 1.90E-108 dispersed
Cco02g2420 Cco-Chr2:36581949 Cco02g2421 Cco-Chr2:36586687 1.00E-216 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2421 - - - 0.0