Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2423 | ATGGTTTTTCACTTGAGAGTTGAGACTACATACATCCCTCCAGCAAAGCCAAAATCTCTCTCAGTACTTAATTCGCTTCCTCACAAATCCCTAGAAGAATTTATGGAACAAACAAAGTACAGAGCCGATCTTCTTTCATCCCTCTTCCTTGTCCTCATCCTTTTACTCTCCCTTTCCGGCCGATCCGCCGTTCATGCCTACAAGAACTACACCGTTGGAGATTCCCTCGGTTGGTTCGACAAATTGGAGAAACCTGCTGTCGATTACCAAGAATGGACCGCTGGCAAGACCTTCGGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTCGTGCAAACATACAATTTCACCACATACAAGCTTTGTGACTACGATGATGCATCGGAAAACGACACGACGGAATGGTCTGCCGCCGACCCGTCAGCGACCACTCCCTACGCCGTGACCGTGGCCGTCCCATTGGTGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTACGACGGAGAGCAATGCCAAAATGGCCAACAATTCAAAATAAACGTCACCCATGGACAAGGCCTCCCAAAAAGCATGAGAGATTCTTCGGACGAAGCTCCAGCTCCAGTAGTTCCCGACACCGGTGACCAAACCGAAGCTGCACCCGACACCATTGTCCCTTCCAGTTTCGACAATCCTCGAAATGACGTCGCTGATAGCGATAAGGAAGCTTCAGGCTCCGACTCGTTATCGCTTTGCATCAAGTTTAATGAGCTCTTCTTCTTGTTAGCTGGTATTGTTTCTGCCTGCTTTTTTCTTTGTACCGAGTGA | 822 | 48.3 | MVFHLRVETTYIPPAKPKSLSVLNSLPHKSLEEFMEQTKYRADLLSSLFLVLILLLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQEWTAGKTFGLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASENDTTEWSAADPSATTPYAVTVAVPLVKEGTNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVVPDTGDQTEAAPDTIVPSSFDNPRNDVADSDKEASGSDSLSLCIKFNELFFLLAGIVSACFFLCTE | 273 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 36604397 | 36608587 | + | CcPI632755_02g024230.1 | Cco02g2423 | 173180 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2423 | 273 | SUPERFAMILY | Cupredoxins | 68 | 186 | IPR008972 | - | |
Cco02g2423 | 273 | Pfam | Plastocyanin-like domain | 80 | 180 | IPR003245 | GO:0009055(InterPro) | |
Cco02g2423 | 273 | Gene3D | - | 67 | 191 | IPR008972 | - | |
Cco02g2423 | 273 | MobiDBLite | consensus disorder prediction | 190 | 244 | - | - | |
Cco02g2423 | 273 | FunFam | Early nodulin-like protein 18 | 67 | 189 | - | - | |
Cco02g2423 | 273 | PANTHER | BLUE COPPER PROTEIN | 54 | 199 | IPR039391 | GO:0009055(InterPro)|GO:0046658(PANTHER) | |
Cco02g2423 | 273 | CDD | Phytocyanin | 68 | 186 | - | - | |
Cco02g2423 | 273 | ProSiteProfiles | Phytocyanin domain profile. | 68 | 188 | IPR003245 | GO:0009055(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2423 | Cco-Chr2:36604397 | Cco06g0030 | Cco-Chr6:305705 | 2.80E-33 | dispersed | |
Cco02g2423 | Cco-Chr2:36604397 | Cco08g1283 | Cco-Chr8:24616438 | 1.20E-12 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2423 | - | - | - | 0.0 |