Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2423 ATGGTTTTTCACTTGAGAGTTGAGACTACATACATCCCTCCAGCAAAGCCAAAATCTCTCTCAGTACTTAATTCGCTTCCTCACAAATCCCTAGAAGAATTTATGGAACAAACAAAGTACAGAGCCGATCTTCTTTCATCCCTCTTCCTTGTCCTCATCCTTTTACTCTCCCTTTCCGGCCGATCCGCCGTTCATGCCTACAAGAACTACACCGTTGGAGATTCCCTCGGTTGGTTCGACAAATTGGAGAAACCTGCTGTCGATTACCAAGAATGGACCGCTGGCAAGACCTTCGGCCTCGGCGATTTTCTAATTTTTAACACGGACAACAATCACTCGGTCGTGCAAACATACAATTTCACCACATACAAGCTTTGTGACTACGATGATGCATCGGAAAACGACACGACGGAATGGTCTGCCGCCGACCCGTCAGCGACCACTCCCTACGCCGTGACCGTGGCCGTCCCATTGGTGAAAGAAGGGACCAACTATTTCTTCTCCGGCAACTACGACGGAGAGCAATGCCAAAATGGCCAACAATTCAAAATAAACGTCACCCATGGACAAGGCCTCCCAAAAAGCATGAGAGATTCTTCGGACGAAGCTCCAGCTCCAGTAGTTCCCGACACCGGTGACCAAACCGAAGCTGCACCCGACACCATTGTCCCTTCCAGTTTCGACAATCCTCGAAATGACGTCGCTGATAGCGATAAGGAAGCTTCAGGCTCCGACTCGTTATCGCTTTGCATCAAGTTTAATGAGCTCTTCTTCTTGTTAGCTGGTATTGTTTCTGCCTGCTTTTTTCTTTGTACCGAGTGA 822 48.3 MVFHLRVETTYIPPAKPKSLSVLNSLPHKSLEEFMEQTKYRADLLSSLFLVLILLLSLSGRSAVHAYKNYTVGDSLGWFDKLEKPAVDYQEWTAGKTFGLGDFLIFNTDNNHSVVQTYNFTTYKLCDYDDASENDTTEWSAADPSATTPYAVTVAVPLVKEGTNYFFSGNYDGEQCQNGQQFKINVTHGQGLPKSMRDSSDEAPAPVVPDTGDQTEAAPDTIVPSSFDNPRNDVADSDKEASGSDSLSLCIKFNELFFLLAGIVSACFFLCTE 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36604397 36608587 + CcPI632755_02g024230.1 Cco02g2423 173180

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2423 273 SUPERFAMILY Cupredoxins 68 186 IPR008972 -
Cco02g2423 273 Pfam Plastocyanin-like domain 80 180 IPR003245 GO:0009055(InterPro)
Cco02g2423 273 Gene3D - 67 191 IPR008972 -
Cco02g2423 273 MobiDBLite consensus disorder prediction 190 244 - -
Cco02g2423 273 FunFam Early nodulin-like protein 18 67 189 - -
Cco02g2423 273 PANTHER BLUE COPPER PROTEIN 54 199 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Cco02g2423 273 CDD Phytocyanin 68 186 - -
Cco02g2423 273 ProSiteProfiles Phytocyanin domain profile. 68 188 IPR003245 GO:0009055(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2423 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2423 Cco-Chr2:36604397 Cco06g0030 Cco-Chr6:305705 2.80E-33 dispersed
Cco02g2423 Cco-Chr2:36604397 Cco08g1283 Cco-Chr8:24616438 1.20E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g956 . . . . . . . . . . . . . . . Cpe05g00463 . . . . . . . . Cla02g02197 Cam02g2342 Cec02g2381 Cco02g2423 Clacu02g2315 Cmu02g2248 Cre02g2575 . Cone5ag1429 . . . Csa06g02492 Chy05g00185 Cme05g00219 . . . . . . . . . . Cmo20g00135 . Cma20g00126 . Car20g00109 Cpe16g00842 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g1671 . 10 154 Phytocyanin Superfamily AT3G20570 50.6 8.2e-38 154.1
Cco10g1539 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 6.7e-38 154.1
Cco08g1549 . 7 169 Phytocyanin Superfamily AT2G25060 50.9 3.8e-42 168.3
Cco10g1539 . 11 178 Phytocyanin Superfamily AT5G15350 52.4 7.4e-48 187.2
Cco08g1549 . 16 171 Phytocyanin Superfamily AT4G31840 52.6 3.7e-42 168.3
Cco01g1728 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cco01g1728 . 12 125 Phytocyanin Superfamily AT3G18590 61.2 6.4e-37 151.0
Cco05g1671 . 10 154 Phytocyanin Superfamily AT3G20570 50.6 8.2e-38 154.1
Cco08g1549 . 7 169 Phytocyanin Superfamily AT2G25060 50.9 3.8e-42 168.3
Cco08g1549 . 16 171 Phytocyanin Superfamily AT4G31840 52.6 3.7e-42 168.3
Cco10g1539 . 14 127 Phytocyanin Superfamily AT3G01070 63.5 6.7e-38 154.1
Cco10g1539 . 11 178 Phytocyanin Superfamily AT5G15350 52.4 7.4e-48 187.2
Cco02g2423 . 45 263 Phytocyanin Superfamily AT1G08500 56.8 5.7e-64 241.1
Cco03g1459 . 29 140 Phytocyanin Superfamily AT2G27035 58.9 4.5e-39 157.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013663 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 0 1 1 1 26