Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2469 ATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGTATCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGATGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCGTCGAGTTCTACTCTGAAGGACAAGGACTCTGGTTCTGGTCAAGCTATCTCGTCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA 975 46.46 MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGVSESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIK 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37050865 37053726 - CcPI632755_02g024690.1 Cco02g2469 173226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2469 324 MobiDBLite consensus disorder prediction 208 239 - -
Cco02g2469 324 MobiDBLite consensus disorder prediction 279 324 - -
Cco02g2469 324 MobiDBLite consensus disorder prediction 24 51 - -
Cco02g2469 324 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cco02g2469 324 MobiDBLite consensus disorder prediction 185 243 - -
Cco02g2469 324 Gene3D - 149 211 - -
Cco02g2469 324 MobiDBLite consensus disorder prediction 1 69 - -
Cco02g2469 324 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 267 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco02g2469 324 SMART cbf3 148 209 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 MobiDBLite consensus disorder prediction 187 203 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2469 Cco-Chr2:37050865 Cco04g2302 Cco-Chr4:36553776 7.10E-28 dispersed
Cco02g2469 Cco-Chr2:37050865 Cco03g1365 Cco-Chr3:27237883 8.10E-72 wgd
Cco02g2469 Cco-Chr2:37050865 Cco09g0394 Cco-Chr9:3582610 1.90E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58871 PF02045 CBFB_NFYA 1.80E-26 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2469 K08064 - csv:101212961 594.349