Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2469 ATGCAGCAGACTAGTAGTTATTCTGAACCTTGGTGGCGTAGTATTGGGTACAATCATATCTCCCCGCCACCAGCAGGAGGGAATGTGTCCAATTCAACATCACTGGAATGTACTAATGGTGTATCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGATGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCTCCTACAGTGCATGGTGGATGTATCACACAACCTCCTCAGCTTGAACTTGTAGGCCACTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCTGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTATCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCTTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTGATAAAAGTTAGAAAGCCATATCTTCATGAATCACGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGTGGACGATTTGCCAAGAAAAATGAAGCTAATTCGTCGAGTTCTACTCTGAAGGACAAGGACTCTGGTTCTGGTCAAGCTATCTCGTCGCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCGCCTTGTGCCTTGGCTGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGAAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAACGGCAGTAGCCAATTCCATAATTACAGTAGCTTCCAAGCTTCTCCGTATGGTTTACGGTCTGGTGAGAGAGGTGAAGATGGAGACTGCTCGGGACAGCAGCGAAGTGTCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA 975 46.46 MQQTSSYSEPWWRSIGYNHISPPPAGGNVSNSTSLECTNGVSESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPTVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSSSTLKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEERTQLHEAYEARSYVNGSSQFHNYSSFQASPYGLRSGERGEDGDCSGQQRSVSENQAAQRRLAIK 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37050865 37053726 - CcPI632755_02g024690.1 Cco02g2469 173226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2469 324 MobiDBLite consensus disorder prediction 208 239 - -
Cco02g2469 324 MobiDBLite consensus disorder prediction 279 324 - -
Cco02g2469 324 MobiDBLite consensus disorder prediction 24 51 - -
Cco02g2469 324 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677(InterPro)|GO:0016602(InterPro)
Cco02g2469 324 MobiDBLite consensus disorder prediction 185 243 - -
Cco02g2469 324 Gene3D - 149 211 - -
Cco02g2469 324 MobiDBLite consensus disorder prediction 1 69 - -
Cco02g2469 324 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 8 267 IPR001289 GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cco02g2469 324 SMART cbf3 148 209 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2469 324 MobiDBLite consensus disorder prediction 187 203 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2469 K08064 - - csv:101212961 594.349
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2469 Cco-Chr2:37050865 Cco04g2302 Cco-Chr4:36553776 7.10E-28 dispersed
Cco02g2469 Cco-Chr2:37050865 Cco03g1365 Cco-Chr3:27237883 8.10E-72 wgd
Cco02g2469 Cco-Chr2:37050865 Cco09g0394 Cco-Chr9:3582610 1.90E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g216 Blo03g00980 Blo03g01379 . . Bpe01g00318 Bpe08g01208 Bma14g00770 Bma07g01396 Cmo10g00972 Cmo11g00859 Cma10g00928 . . . Sed08g1078 Cpe05g00493 Cpe18g00169 Bhi02g01538 Tan09g0832 Cmetu02g0337 . Hepe09g1122 . . Cla02g02245 Cam02g2393 Cec02g2427 Cco02g2469 Clacu02g2363 Cmu02g2297 Cre02g2617 . Cone5ag1448 Cone18ag0101 Cone11ag1494 Lsi06g00527 Csa06g02549 Chy05g00137 Cme05g00165 Blo08g00103 Blo14g00284 . Bda09g00320 Bpe08g00276 Bpe11g00922 Bma07g00265 Bma11g00292 . Cmo02g01293 Cmo20g00092 Cma11g00848 Cma20g00089 Car02g01043 Car20g00071 Cpe16g00877 Cpe04g00917 Bhi10g00303 . . . . . . Cla03g01271 Cam03g1337 Cec03g1373 Cco03g1365 Clacu03g1359 Cmu03g1930 Cre03g1600 . . Chy02g01451 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g2469 . 1 254 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.2 8.3e-54 207.6
Cco02g2469 . 87 324 CCAAT-HAP2 Transcription Factor Family AT3G20910 50.6 1.3e-47 187.2
Cco03g1365 . 58 231 CCAAT-HAP2 Transcription Factor Family AT3G20910 61.4 5.5e-46 181.8
Cco04g2302 . 78 196 CCAAT-HAP2 Transcription Factor Family AT2G34720 66.7 6.6e-38 154.1
Cco04g2302 . 17 193 CCAAT-HAP2 Transcription Factor Family AT1G30500 58.8 6.2e-48 187.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58871 PF02045 CBFB_NFYA 1.80E-26 No_clan Cco TF