Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2486 ATGACTGATCCTTACCCCATCAACAACAATGGCTCCTTTGGCAATTTATACCCTCTTCACCATTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATTCTTACTCTCCTTATTATGATCATCCCTTCTCTCTTTCTTTCTCCAATGATAATAATAACAATAATAATACCCTAATGACCTCTCCTCATTATCCTTCTTCCTCTCCTCAAGTCCTTCTTCCCCTTCTAAGCTTAAGCCCTGCAAGAGTAGCGCAAGATCATGATAATGAAAATCACTCATTTTCCAAAGACTTGATCAAGAACTTTTGCAACCCAGCTGAAGATGATGTTGACAATGATAATGATGATGACGATGATCAAAGTGTTACTATTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTTCTAATTCTGATTTGATTTTGAGACTTTCTTCAACTGAGATCTCAGATCAAGATGATCATCATCAATTAGAAGATCAAGTTCCTAATTCTAATTATTCTTCTTCTATTTCCAATATTATTACTAATGCTACTACTACTACTGGACTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAATCACTAAGAGGAACACAACCAACGGCAATGCTTAGGCTGCCATGTTATTGCTGTGCAGTTGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTACAAAAGAAAACATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAAAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCATAAGAGATCTCTTAAAGATCATATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGAATTGATCACTCTTTTGAAGAAGATGACGAGCCAGCTTCTGAGATTGAAACATGA 1101 38.06 MTDPYPINNNGSFGNLYPLHHYFSSSSSSSSSSSSSNSYSPYYDHPFSLSFSNDNNNNNNTLMTSPHYPSSSPQVLLPLLSLSPARVAQDHDNENHSFSKDLIKNFCNPAEDDVDNDNDDDDDQSVTIALHLGLPTPSSSSSNSDLILRLSSTEISDQDDHHQLEDQVPNSNYSSSISNIITNATTTTGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAVGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFEEDDEPASEIET 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37194600 37197484 + CcPI632755_02g024860.1 Cco02g2486 173243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2486 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 294 321 IPR013087 -
Cco02g2486 366 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 293 317 - -
Cco02g2486 366 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Cco02g2486 366 Pfam Zinc finger, C2H2 type 210 229 IPR013087 -
Cco02g2486 366 SMART c2h2final6 294 314 IPR013087 -
Cco02g2486 366 SMART c2h2final6 210 232 IPR013087 -
Cco02g2486 366 SMART c2h2final6 320 343 IPR013087 -
Cco02g2486 366 SMART c2h2final6 257 289 IPR013087 -
Cco02g2486 366 PANTHER ZINC FINGER PROTEIN WIP2 34 365 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(InterPro)|GO:0010468(PANTHER)|GO:0048856(PANTHER)
Cco02g2486 366 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 237 IPR013087 -
Cco02g2486 366 SUPERFAMILY beta-beta-alpha zinc fingers 275 314 IPR036236 -
Cco02g2486 366 FunFam Zinc finger protein WIP2 263 345 - -
Cco02g2486 366 Gene3D Classic Zinc Finger 209 232 - -
Cco02g2486 366 Gene3D Classic Zinc Finger 254 342 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1365 Cco-Chr1:23128183 Cco02g2486 Cco-Chr2:37194600 3.10E-66 transposed
Cco03g1004 Cco-Chr3:15600211 Cco02g2486 Cco-Chr2:37194600 1.20E-84 transposed
Cco04g0150 Cco-Chr4:3517654 Cco02g2486 Cco-Chr2:37194600 1.90E-97 transposed
Cco10g1704 Cco-Chr10:30590448 Cco02g2486 Cco-Chr2:37194600 1.70E-94 transposed
Cco02g2486 Cco-Chr2:37194600 Cco09g0403 Cco-Chr9:3679271 2.20E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58874 None None None None Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2486 - - - 0.0