Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2489 | ATGGGATCCATGAATTCAAACAATTGGCTTTCCTTTCCACTTTCACCTACTAATCCTTCTTTACCACCACATCTTCAAACCACAACTCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGACATCCCATTTCAAACCCACCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGCAATGATACAGATTATTTGTTTCCAATCACAAGATTAGTTTCTGTTCATCAACAACAACAACAACAACCCACTGCTCCTCCTCCTAATATAAATCTTGACTCTTCTACTAACTTTGACCTTCAAGATAATTCCAATTGTTTGCAATCTTTAACCCTTTCAATGGGCAGTGGCAAACCCTCTACTTGTGAACAAACAACCTCCACCCCTGACAATAGTACCTCCAATAATAATAATAACAATAATAATACCACTCTTGATGTCACCCCTCGAAGAACTTTGGACACTTTTGGCCAAAGAACTTCCATTTATCGCGGTGTCACCAGGCATAGATGGACAGGAAGGTATGAAGCACATTTGTGGGATAATAGTTGCAGAAGGGAAGGGCAGTCCAGGAAGGGTCGGCAAGGTGGGTATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCAATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACAGAAGAGGAAGCAGCAGAAGCATATGACATAGCGGCGATAAAATTTAGAGGGCTAAATGCAGTGACAAATTTCGACATGAGTCGTTACGACGTGAAAAGCATATTAGAGAGCAACACGCTCCCAATCGGTGGCGGTGCAGCAAAGCGACTAAAAGAGGCTCAAGCCATGGAATCGTCTCGAAAACGAGACGAGATGATTGCCCTAGGTTCCTCTTCCTCCTCATCCTCTTGCTTCCAATATGGAACCTCTTCCTCCTCAACCAATAATTCCTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATGGACCATCACCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGATATTTCTCATTACACCCACCATCATTCCTCCTCCTTCCACCACCCTTCTTCTTCTTACATCCACCACTCATCTGACCATTCCGCTTATCCTAACAACAACGGCCATCCATTCTACGGTGGAGGATATCTTCATAATCATCCCGCTTTGCTTCACGGGATGATCAATATGGGCGGTGGAGGTGGCGGAGGCGGCGGAGGAGCTTCTAGTTTGGACACTAATAACAATACTAATACCTTGAATCATTTTGAGAATAATACTAGTGGAGGAGGGTATCTTGGGAACGCATTTGGGATGGGTTCTACCTCGAACAGCAGCGGCGCCGCAGCGGAGGAATATGCGCTCGTTAAGGTTGACTATGACATGGCTAATTCTGGCGGGTACGGTGGTTGGACGGGGGATTCGGTTCAAGGTTCTAACGCTGGGGTTTTCTCTATGTGGAACGATTGA | 1794 | 43.48 | MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHSHHFSLGNLENDHNMDIPFQTHHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVSVHQQQQQQPTAPPPNINLDSSTNFDLQDNSNCLQSLTLSMGSGKPSTCEQTTSTPDNSTSNNNNNNNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAMESSRKRDEMIALGSSSSSSSCFQYGTSSSSTNNSSHYPNLLQQPNLNMDHHLQTQPLLSLQNHHDISHYTHHHSSSFHHPSSSYIHHSSDHSAYPNNNGHPFYGGGYLHNHPALLHGMINMGGGGGGGGGGASSLDTNNNTNTLNHFENNTSGGGYLGNAFGMGSTSNSSGAAAEEYALVKVDYDMANSGGYGGWTGDSVQGSNAGVFSMWND | 597 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 37230020 | 37233351 | + | CcPI632755_02g024890.1 | Cco02g2489 | 173246 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2489 | 597 | CDD | AP2 | 195 | 261 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | Gene3D | AP2/ERF domain | 196 | 261 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | Gene3D | AP2/ERF domain | 295 | 355 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | SUPERFAMILY | DNA-binding domain | 294 | 355 | IPR016177 | GO:0003677(InterPro) | |
Cco02g2489 | 597 | MobiDBLite | consensus disorder prediction | 399 | 419 | - | - | |
Cco02g2489 | 597 | ProSiteProfiles | AP2/ERF domain profile. | 196 | 259 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 154 | 453 | - | - | |
Cco02g2489 | 597 | FunFam | AP2-like ethylene-responsive transcription factor | 294 | 355 | - | - | |
Cco02g2489 | 597 | MobiDBLite | consensus disorder prediction | 454 | 474 | - | - | |
Cco02g2489 | 597 | CDD | AP2 | 294 | 355 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | MobiDBLite | consensus disorder prediction | 460 | 474 | - | - | |
Cco02g2489 | 597 | PRINTS | Ethylene responsive element binding protein signature | 197 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | PRINTS | Ethylene responsive element binding protein signature | 335 | 355 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | ProSiteProfiles | AP2/ERF domain profile. | 295 | 353 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | SMART | rav1_2 | 295 | 359 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | SMART | rav1_2 | 196 | 265 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | MobiDBLite | consensus disorder prediction | 108 | 182 | - | - | |
Cco02g2489 | 597 | SUPERFAMILY | DNA-binding domain | 195 | 261 | IPR016177 | GO:0003677(InterPro) | |
Cco02g2489 | 597 | Pfam | AP2 domain | 296 | 345 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco02g2489 | 597 | FunFam | AP2-like ethylene-responsive transcription factor ANT | 195 | 261 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2489 | Cco-Chr2:37230020 | Cco11g0916 | Cco-Chr11:13224340 | 1.50E-103 | dispersed | |
Cco02g2489 | Cco-Chr2:37230020 | Cco04g1540 | Cco-Chr4:30761904 | 4.90E-91 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58875 | PF00847 | AP2 | 2.90E-09 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2489 | K09285 | - | csv:101207097 | 1001.5 |