Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2489 ATGGGATCCATGAATTCAAACAATTGGCTTTCCTTTCCACTTTCACCTACTAATCCTTCTTTACCACCACATCTTCAAACCACAACTCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGACATCCCATTTCAAACCCACCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGCAATGATACAGATTATTTGTTTCCAATCACAAGATTAGTTTCTGTTCATCAACAACAACAACAACAACCCACTGCTCCTCCTCCTAATATAAATCTTGACTCTTCTACTAACTTTGACCTTCAAGATAATTCCAATTGTTTGCAATCTTTAACCCTTTCAATGGGCAGTGGCAAACCCTCTACTTGTGAACAAACAACCTCCACCCCTGACAATAGTACCTCCAATAATAATAATAACAATAATAATACCACTCTTGATGTCACCCCTCGAAGAACTTTGGACACTTTTGGCCAAAGAACTTCCATTTATCGCGGTGTCACCAGGCATAGATGGACAGGAAGGTATGAAGCACATTTGTGGGATAATAGTTGCAGAAGGGAAGGGCAGTCCAGGAAGGGTCGGCAAGGTGGGTATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCAATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGTGCATCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACAGAAGAGGAAGCAGCAGAAGCATATGACATAGCGGCGATAAAATTTAGAGGGCTAAATGCAGTGACAAATTTCGACATGAGTCGTTACGACGTGAAAAGCATATTAGAGAGCAACACGCTCCCAATCGGTGGCGGTGCAGCAAAGCGACTAAAAGAGGCTCAAGCCATGGAATCGTCTCGAAAACGAGACGAGATGATTGCCCTAGGTTCCTCTTCCTCCTCATCCTCTTGCTTCCAATATGGAACCTCTTCCTCCTCAACCAATAATTCCTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATGGACCATCACCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCACCATGATATTTCTCATTACACCCACCATCATTCCTCCTCCTTCCACCACCCTTCTTCTTCTTACATCCACCACTCATCTGACCATTCCGCTTATCCTAACAACAACGGCCATCCATTCTACGGTGGAGGATATCTTCATAATCATCCCGCTTTGCTTCACGGGATGATCAATATGGGCGGTGGAGGTGGCGGAGGCGGCGGAGGAGCTTCTAGTTTGGACACTAATAACAATACTAATACCTTGAATCATTTTGAGAATAATACTAGTGGAGGAGGGTATCTTGGGAACGCATTTGGGATGGGTTCTACCTCGAACAGCAGCGGCGCCGCAGCGGAGGAATATGCGCTCGTTAAGGTTGACTATGACATGGCTAATTCTGGCGGGTACGGTGGTTGGACGGGGGATTCGGTTCAAGGTTCTAACGCTGGGGTTTTCTCTATGTGGAACGATTGA 1794 43.48 MGSMNSNNWLSFPLSPTNPSLPPHLQTTTHSHHFSLGNLENDHNMDIPFQTHHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVSVHQQQQQQPTAPPPNINLDSSTNFDLQDNSNCLQSLTLSMGSGKPSTCEQTTSTPDNSTSNNNNNNNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAMESSRKRDEMIALGSSSSSSSCFQYGTSSSSTNNSSHYPNLLQQPNLNMDHHLQTQPLLSLQNHHDISHYTHHHSSSFHHPSSSYIHHSSDHSAYPNNNGHPFYGGGYLHNHPALLHGMINMGGGGGGGGGGASSLDTNNNTNTLNHFENNTSGGGYLGNAFGMGSTSNSSGAAAEEYALVKVDYDMANSGGYGGWTGDSVQGSNAGVFSMWND 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37230020 37233351 + CcPI632755_02g024890.1 Cco02g2489 173246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2489 597 CDD AP2 195 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 Gene3D AP2/ERF domain 196 261 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 Gene3D AP2/ERF domain 295 355 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 SUPERFAMILY DNA-binding domain 294 355 IPR016177 GO:0003677(InterPro)
Cco02g2489 597 MobiDBLite consensus disorder prediction 399 419 - -
Cco02g2489 597 ProSiteProfiles AP2/ERF domain profile. 196 259 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 154 453 - -
Cco02g2489 597 FunFam AP2-like ethylene-responsive transcription factor 294 355 - -
Cco02g2489 597 MobiDBLite consensus disorder prediction 454 474 - -
Cco02g2489 597 CDD AP2 294 355 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 MobiDBLite consensus disorder prediction 460 474 - -
Cco02g2489 597 PRINTS Ethylene responsive element binding protein signature 197 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 PRINTS Ethylene responsive element binding protein signature 335 355 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 ProSiteProfiles AP2/ERF domain profile. 295 353 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 SMART rav1_2 295 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 SMART rav1_2 196 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 MobiDBLite consensus disorder prediction 108 182 - -
Cco02g2489 597 SUPERFAMILY DNA-binding domain 195 261 IPR016177 GO:0003677(InterPro)
Cco02g2489 597 Pfam AP2 domain 296 345 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco02g2489 597 FunFam AP2-like ethylene-responsive transcription factor ANT 195 261 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2489 Cco-Chr2:37230020 Cco11g0916 Cco-Chr11:13224340 1.50E-103 dispersed
Cco02g2489 Cco-Chr2:37230020 Cco04g1540 Cco-Chr4:30761904 4.90E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58875 PF00847 AP2 2.90E-09 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2489 K09285 - csv:101207097 1001.5