Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2490 ATGGATTCGCCTCAGCCATCCCCACCAGAGCTTCATCTTCACAGTCTCACACCCCTCAAAGTTCTCGGAAAAGGAGCCATGGGAACCGTCTTCCTCGTCCACGACCGCCTTTCCGACGAGCCGGCTCATTTCCCCTTTGCTCTCAAAGTCGTCGAGAAATCCTCTTTCGTCTCCAAACTCGACGCCGACCGGCGAGCTCGTTGGGAGATTCAGGTTCTTTCTCGTTTGTCCTTCCCTAAACCCCACCCTTTCCTCCCCCGCATTATTGGTTCCTTCGAATCCGATGAGTTTTTGGGCTGGGCCATTCCGTACTGTCCCGGCGGCGATCTTAACGTCTTGCGTTACCGTCAATTGGACCGGGTTTTCTCGCCGGCAGTCATTCGGTTCTATTTGGCCGAGATCGTCTGTGCGCTCGACCATCTTCATAGCATGGGCATCGTCTACCGAGATTTGAAGCCAGAGAATGTGTTGATTCAACAATCGGGTCACGTCACTCTCACGGACTTTGATTTGTCGCGTAGTTTGACACGCAGAACAGTAAAAGACGTCGTCACGCTTGATAACTCCAACCACGAGAAGCCGCCGATCGCCGTCCGCCCAAAACACGGGCGAAACTTGACGCGTTGGATTATGACGACCTCCAGTGTTAAAGGCGGGTTAAAAAAGGCTAAATCGGCTCGGGTTAGTCCTGTGAGTCGCCGGAAGCCGAGTTTCACGAATGGCGAGCGGTCAAATTCGTTCGTCGGAACGGAGGAGTATGTCTCACCGGAGGTTGTTCGAGGCGACGGTCATGAATTCGCCGTCGACTGGTGGGCCCTGGGGATTCTCACGTACGAGATGCTCTACGGGACGACGCCGTTTAAGGGGAAAAACAGGAAAGAGACGTTCCGAAACGTTTTGGTCAAAGCTCCGGAGTTGATTGGAAAGCGTTCGGATTTAACGGATTTGATCGAACGGTTGCTGGTAAAAGACCCCACGAAGCGGTTGGGGTACGTACGGGGCGCGTGCGAGATCAAAGAGCATGCGTTTTTTAACGGCGTTAAGTGGGACCTATTAACGGAGGTCACGCGACCGCCGTTTTTACCTCCTCGTGAAGAAACGGAATGGGCGGAGAATTTAACGCTCGGTTGTGTGAGTATAACGGAATACTTTCTCAGACAGAGATCGCCACCTTCGTTTCCACCGTCGCCGTCGTCAACTCCGTCCACCTCCTTCAGTTGGCAGAATAATATGTCATTGACGGAGTTCTGA 1251 53.16 MDSPQPSPPELHLHSLTPLKVLGKGAMGTVFLVHDRLSDEPAHFPFALKVVEKSSFVSKLDADRRARWEIQVLSRLSFPKPHPFLPRIIGSFESDEFLGWAIPYCPGGDLNVLRYRQLDRVFSPAVIRFYLAEIVCALDHLHSMGIVYRDLKPENVLIQQSGHVTLTDFDLSRSLTRRTVKDVVTLDNSNHEKPPIAVRPKHGRNLTRWIMTTSSVKGGLKKAKSARVSPVSRRKPSFTNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWALGILTYEMLYGTTPFKGKNRKETFRNVLVKAPELIGKRSDLTDLIERLLVKDPTKRLGYVRGACEIKEHAFFNGVKWDLLTEVTRPPFLPPREETEWAENLTLGCVSITEYFLRQRSPPSFPPSPSSTPSTSFSWQNNMSLTEF 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37248961 37250211 + CcPI632755_02g024900.1 Cco02g2490 173247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2490 416 SUPERFAMILY Protein kinase-like (PK-like) 17 411 IPR011009 -
Cco02g2490 416 MobiDBLite consensus disorder prediction 222 243 - -
Cco02g2490 416 PANTHER FLIPPASE KINASE 1-RELATED 10 365 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cco02g2490 416 Gene3D Transferase(Phosphotransferase) domain 1 241 363 - -
Cco02g2490 416 FunFam Serine/threonine-protein kinase OXI1 242 363 - -
Cco02g2490 416 ProSitePatterns Protein kinases ATP-binding region signature. 22 49 IPR017441 GO:0005524(InterPro)
Cco02g2490 416 Gene3D Transferase(Phosphotransferase) domain 1 109 178 - -
Cco02g2490 416 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2490 416 ProSiteProfiles Protein kinase domain profile. 16 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2490 416 FunFam Serine/threonine-protein kinase UCNL 16 108 - -
Cco02g2490 416 FunFam Serine/threonine-protein kinase OXI1 109 177 - -
Cco02g2490 416 MobiDBLite consensus disorder prediction 389 416 - -
Cco02g2490 416 SMART serkin_6 16 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2490 416 Gene3D Phosphorylase Kinase; domain 1 17 108 - -
Cco02g2490 416 Pfam Protein kinase domain 239 344 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2490 416 Pfam Protein kinase domain 19 183 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2490 416 MobiDBLite consensus disorder prediction 399 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2490 Cco-Chr2:37248961 Cco09g0841 Cco-Chr9:7910846 3.10E-76 dispersed
Cco02g2490 Cco-Chr2:37248961 Cco02g2354 Cco-Chr2:35959367 5.50E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86618 PF00069 Pkinase 1.30E-30 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2490 - - - 0.0