Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco02g2522 | ATGCGGTCTCACGACCTTTACAAAGTACAAACGGACCCTAAATCGTTCTTCCTCACCAACTTCGAAGGACTTTCCGCTTCCGGTGCTTTTCCGGCCGCCGTTTCTTGCTCGTCCGAGATTGTCCTGCTTCATTTAATCGTGTCTGAAGTTATTTCCATATTTCCGCATTTACCCATGGGAGAAGACGATGAACAGGATAGACAGAAGATCACAAATCTTCATCTAAGATCGGAAAGGATTACTATGGGCCATCAACAGATGGCAAACCAGCCTCATGTAATCAATCAGTCCCAAGTTATGAACCAGCCTCAGTCTCAAGTTATGAACCAGCCACAGGCCATCAACCAGCCAAATCTTTTGCCGCAACCTCAGGCCATGCAGCAGTCCCAGATGATCATGAGTCACTCTCTGCCGCCTATGATGAGTGGCAACTATAAGTCAAGATCAGGGCGAGGAAATTGGAAGGGAAAAGGTGTTAGTGACAAAAGGATAAACAATAGGAGAATGGAAAAACCTTTACCGGGTTCCATGAGTGGTCCAAATAGTGCTGTAGGGTATCAACCTCCAAGTCTTCATGAGCTGCAGTCTCAAAATCGTTTAAGGGCTCGTAAGTTTTACTCTAAAAAGAAGTTCGGTAATAGATTTGCACCTTATGCGCCTCGTAATACCACGTCTTTTATCATTCGTGCAAAGAAGTCTGGTGGGATCGCTTCGCTTGTGTCCCCTAGTCCCGTAACACCCGCTGTGCTTCCTACTCCAATGTTTTCCCCTTCAAGGGAGGCGTTGGGTGATATGGCCAAGGAGGAATGGGGTGTTGATGGTTATGGATCAATGAAAGGGTTGATAAGGCTTCGAGGGTCTGAGAATAAGGCAGAAGTGCAGGATGAGGAAGAAGAGGAAGTTGGTGGTGGTTCGAGTGATAGTGATGTAGAGGAACATCTGGAGGTAGAACGCAGATTGGACCATGATTTGAGCCGATTTGAAATGATATATCAGAACTATGGAGTAGAGTATAATAACTGTTTGGAAAATAGGGTCGATGATCAAGATAGCCATATAGCTCAGTTGGAGGAGGAGAACTTGACACTGAAGGAGAAACTTTTTCTTATGGAGAGAGAGCTTGTTGACTTGAGGAGGAAGTTGCAACTTCTCGAGGGGCAAAACCCAGCTATTGAAGATGTAAATGAGGAGGTAGTGGAGAACGTATCTGAGAATGAGAGTGATGGAGGGTTGGAGATGGAGTATGTATCTGAAATTAGACAAAACCAAGATGCTGATGTTGATTCTAAGGAGGAAGATGAAGAAGTCTTAGAGATTGAGGGTGGGGAAGAATGTGTAGGGGAAGATTTCAAGAGAGAGAAAGTGATTGAAAAGACATACATAGTGAATGATGAAACCGTGAAGGAATCAGATGAACAGATTCCGGAAGACGTTGTGGCAAAAGATGATGAATCAAAGGGTGAACTTATTTCAGGGAAGGTAAATGAATGTGACAATATGGACGAAAACTTGGGTAATATTTTGCACACGGATTCAGGGATTGGAAAAGAAGCCATGGTCAATGATGAAGCCGAGCAGAATAGAGTTGTATCTGTAAAAGTACCTGTAGATGTAAAGGAAGGGTGTGAAGAAATAACGGAGGATTCTATCTCACTTTTTGGGATTGTACAGTTTTTGTACCAAAGCGAGTCATACGGCTCTTCTAGTAAAGATTTTGGACATGATCATTTGCTTGCATTGGCCTTCCTGCGACGTCTAGATTCTGAGGATTCGTTTGCCATCTGGGAAATGAGCTGTTGCTGTAAGTTTACTTCTGATGTAGTTGCTTCGTTAGGTCTAATGGCTGTTAGTCACTCAAGTCTTCCTCTTATCCTGTGCATGGACTTAAAGTTTGGTCTGTGCCTATTCTTTGTAGTCATGGATGAGCCTTCCATCAGTTCCACAAGCTCGCAATTAACTGTGGATTTCTATAAGAGTTCATGTCCGAATGTTCTCAGAATCGTAAGGGGAGAAGTCATGATTGCTATTAAGAATGAGATGCGAATGGCTGCTTCACTTCTTCGCCTCCACTTCCACGACTGCTTTGTTAATGGTTGTGACGGATCCGTGCTGTTGGATGGAAGTGATGGGGAGAAATTTGCACTTCCCAACATCAATTCTCTTAGAGGGCTTGAAGTTGTGGACAGAATCAAAGCCGCACTGGAGAATTCATGCCCCGGAGTTGTATCATGTGCTGATTTATTAACTATAGCTGCAAGAGATTCTGTCCTCTTGAGTGGAGGACCGTCATGGAAGGTTTTATTGGGGAGAAGGGATGGATTGGTAGCGAATAAAACAGGAGCTGATCAAGGACTTCCCTCTCCATTTGAAAGCCTTGATGGTATAATCAACAAGTTTGTTGATGTTGGCCTTGGGGTCACCGACGTCGTCGCTTTATCTGGAGCCCATACAATTGGACTTGCAAGATGTGCAATGTTCAACAATAGGCTGTTCAACTTCTCAGGAAGTGGTTCTCCAGACCCAAACATGGAGTCCGCCATGGTATCTGATCTCCAAGCTTTATGCCCTCTCACCGACGACGGCAACAAGACCACCGTTCTCGACAGAAACTCCACCGATTTATTCGACAACCATTACTTCAAAAACTTGCTCAACCGGAAGGGCCTCTTGGGCTCCGACCAAATTCTGTTCTCCGACTCCACCACTACAAAAGCCTTGGTCCAAGCTTATAGCTCTAACACCACGCTTTTCTTCGCCGACTTTGTCAAAGCCATGATCAAGATGGGGAATATAAGTCCACTCACCGGCTCCGCCGGTCAGATCCGAAACAACTGCAGACTCCTTAATTCCTCCTAA | 2856 | 44.75 | MRSHDLYKVQTDPKSFFLTNFEGLSASGAFPAAVSCSSEIVLLHLIVSEVISIFPHLPMGEDDEQDRQKITNLHLRSERITMGHQQMANQPHVINQSQVMNQPQSQVMNQPQAINQPNLLPQPQAMQQSQMIMSHSLPPMMSGNYKSRSGRGNWKGKGVSDKRINNRRMEKPLPGSMSGPNSAVGYQPPSLHELQSQNRLRARKFYSKKKFGNRFAPYAPRNTTSFIIRAKKSGGIASLVSPSPVTPAVLPTPMFSPSREALGDMAKEEWGVDGYGSMKGLIRLRGSENKAEVQDEEEEEVGGGSSDSDVEEHLEVERRLDHDLSRFEMIYQNYGVEYNNCLENRVDDQDSHIAQLEEENLTLKEKLFLMERELVDLRRKLQLLEGQNPAIEDVNEEVVENVSENESDGGLEMEYVSEIRQNQDADVDSKEEDEEVLEIEGGEECVGEDFKREKVIEKTYIVNDETVKESDEQIPEDVVAKDDESKGELISGKVNECDNMDENLGNILHTDSGIGKEAMVNDEAEQNRVVSVKVPVDVKEGCEEITEDSISLFGIVQFLYQSESYGSSSKDFGHDHLLALAFLRRLDSEDSFAIWEMSCCCKFTSDVVASLGLMAVSHSSLPLILCMDLKFGLCLFFVVMDEPSISSTSSQLTVDFYKSSCPNVLRIVRGEVMIAIKNEMRMAASLLRLHFHDCFVNGCDGSVLLDGSDGEKFALPNINSLRGLEVVDRIKAALENSCPGVVSCADLLTIAARDSVLLSGGPSWKVLLGRRDGLVANKTGADQGLPSPFESLDGIINKFVDVGLGVTDVVALSGAHTIGLARCAMFNNRLFNFSGSGSPDPNMESAMVSDLQALCPLTDDGNKTTVLDRNSTDLFDNHYFKNLLNRKGLLGSDQILFSDSTTTKALVQAYSSNTTLFFADFVKAMIKMGNISPLTGSAGQIRNNCRLLNSS | 951 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 37558035 | 37570266 | + | CcPI632755_02g025220.1 | Cco02g2522 | 173279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco02g2522 | 951 | ProSitePatterns | Peroxidases active site signature. | 683 | 694 | IPR019794 | GO:0004601(InterPro) | |
| Cco02g2522 | 951 | MobiDBLite | consensus disorder prediction | 286 | 313 | - | - | |
| Cco02g2522 | 951 | ProSiteProfiles | Plant heme peroxidase family profile. | 651 | 949 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | Gene3D | - | 655 | 949 | - | - | |
| Cco02g2522 | 951 | SUPERFAMILY | Heme-dependent peroxidases | 651 | 949 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | FunFam | Peroxidase | 786 | 928 | - | - | |
| Cco02g2522 | 951 | Coils | Coil | 339 | 387 | - | - | |
| Cco02g2522 | 951 | PRINTS | Haem peroxidase superfamily signature | 742 | 759 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Haem peroxidase superfamily signature | 760 | 772 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Haem peroxidase superfamily signature | 683 | 697 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Haem peroxidase superfamily signature | 868 | 883 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Haem peroxidase superfamily signature | 808 | 823 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PANTHER | OS02G0832600 PROTEIN | 120 | 440 | - | - | |
| Cco02g2522 | 951 | Pfam | Peroxidase | 668 | 913 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | CDD | secretory_peroxidase | 651 | 946 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Cco02g2522 | 951 | Gene3D | Peroxidase, domain 2 | 786 | 928 | - | - | |
| Cco02g2522 | 951 | MobiDBLite | consensus disorder prediction | 467 | 486 | - | - | |
| Cco02g2522 | 951 | FunFam | Peroxidase | 655 | 795 | - | - | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 722 | 735 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 741 | 751 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 923 | 936 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 866 | 881 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 882 | 899 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 807 | 819 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 760 | 775 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 661 | 680 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | PRINTS | Plant peroxidase signature | 685 | 705 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco02g2522 | 951 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 808 | 818 | IPR019793 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g2522 | Cco-Chr2:37558035 | Cco04g1423 | Cco-Chr4:29638604 | 2.10E-88 | dispersed | |
| Cco09g0361 | Cco-Chr9:3243230 | Cco02g2522 | Cco-Chr2:37558035 | 3.50E-60 | dispersed | |
| Cco09g1705 | Cco-Chr9:28469272 | Cco02g2522 | Cco-Chr2:37558035 | 4.10E-63 | dispersed | |
| Cco02g2522 | Cco-Chr2:37558035 | Cco02g2523 | Cco-Chr2:37574647 | 2.10E-83 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco02g2522 | K00430 | - | csv:101211007 | 803.897 |