Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2523 ATGTCGTCCTTCAAATTTGCAGCTTTAGCAGCCTTGTTGTTGTGTATGATGTTGAGGGGATGTTGGGCCCAACTCAGCCCTACCTTCTACGACCAATCTTGCCCTAATCTAACCGCCATAGTCAGAGATGCAATAAGGCAGGCATTCCAGGGTGATGTTCGAGCCGGAGCCAAGCTCATTCGCTTTCACTTCCACGATTGCTTCGTCAATGGTTGTGATGGATCGGTTTTACTAGAGAATCAAGATGGTGTGGAAAGCGAGTTAGATGCTCCAGGGAACCAAGGAATACAAGGCTTTGACATTGTCGACAACATAAAAGCTGCAGTTGAAGCTGCCTGCCCAAACACCGTGTCTTGTGCTGACATCTTAGCCCTTTCATCTCGTGAATCTGTCATCTTGACGGGAGGGCCAAGTTGGGTAGTTCAATTGGGAAGAAGAGATAGCAGAAACGCAAATAGAACTGGAGCTGAAAACAACCTCCCAAGCCCTTTCGAAACACTCGATCAACTTCGGGTAAAATTTAATGCAGTTGGTCTCGATTCTACCGATCTTGTGGCTTTATCTGGAGCGCATACGTTCGGAAGGTCAAGATGCGTATTCTTCAGCGGGCGGCTAAGCAATTTCAGTGGTACCGGAAGTCCAGACCCGACTCTTGACCCGACGTTACGGGATGCACTGGTCATCGCTTGTCCGACCGGCGACGGAAACAACCGCATCGCACTTGACGTGGCGACGCCGGACAGCTTCGACAATGCATACTACACCAATCTGGTCAACAACCGTGGGCTTCTCCAATCGGATCAAGAGCTGTTCTCAACCGAAGGGGCGGAAACCATCGCCACCGTGAACCGTTTTGCCGGCAACCAATCTGATTTCTTTGGTCAGTTCGGTCAGTCTATGATAAACATGGGGAACCTCCAACCATTACTTGCGCCCAATGGAGAAATCAGGTCCAATTGTAGGCGGGTTAATCCTTTGAATATTACCACTGGTGCTGCTACTGCTGTTATGTAA 1014 49.31 MSSFKFAALAALLLCMMLRGCWAQLSPTFYDQSCPNLTAIVRDAIRQAFQGDVRAGAKLIRFHFHDCFVNGCDGSVLLENQDGVESELDAPGNQGIQGFDIVDNIKAAVEAACPNTVSCADILALSSRESVILTGGPSWVVQLGRRDSRNANRTGAENNLPSPFETLDQLRVKFNAVGLDSTDLVALSGAHTFGRSRCVFFSGRLSNFSGTGSPDPTLDPTLRDALVIACPTGDGNNRIALDVATPDSFDNAYYTNLVNNRGLLQSDQELFSTEGAETIATVNRFAGNQSDFFGQFGQSMINMGNLQPLLAPNGEIRSNCRRVNPLNITTGAATAVM 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37574647 37576058 + CcPI632755_02g025230.1 Cco02g2523 173280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2523 337 FunFam Peroxidase 28 173 - -
Cco02g2523 337 FunFam Peroxidase 161 303 - -
Cco02g2523 337 SUPERFAMILY Heme-dependent peroxidases 24 325 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 CDD secretory_peroxidase 24 323 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2523 337 Gene3D Peroxidase, domain 2 161 303 - -
Cco02g2523 337 Gene3D - 29 324 - -
Cco02g2523 337 Pfam Peroxidase 41 287 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cco02g2523 337 PANTHER PEROXIDASE 72-RELATED 14 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 ProSiteProfiles Plant heme peroxidase family profile. 24 324 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2523 337 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0502 Cco-Chr1:4882541 Cco02g2523 Cco-Chr2:37574647 1.50E-116 dispersed
Cco02g2523 Cco-Chr2:37574647 Cco02g2529 Cco-Chr2:37631587 1.20E-110 dispersed
Cco02g2522 Cco-Chr2:37558035 Cco02g2523 Cco-Chr2:37574647 2.10E-83 tandem
Cco02g2523 Cco-Chr2:37574647 Cco02g2524 Cco-Chr2:37581212 4.80E-120 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2523 K00430 - csv:101217743 588.571