Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2524 ATGAAAATGGCTTCTTCTAAGTTTGGAGTAGTCTTGGCGTTGTTTTGGTTAGTGGGTTTGATGGTGGAAGGGTCCTTGGCTCAGCTAAACCCTTCATTTTACGCCAAAACATGTCCTAATTTACCCAAAATTGTAAATGGTGTGGTTGCACAGGCTCTGCGAACCGATGCTCGAGCTGGAGCCAAGCTGATTCGCCTCCATTTTCACGACTGCTTTGTTGACGGGTGCGATGCGTCTGTTTTGCTAGAGAACGCACCAGGCATAGACAGTGAACTTGATGCCCCTGGAAACCAAGGGATTCAAGGTCTTAACATCGTCGACGACATCAAATCTGCTGTCGAAAAGGCTTGCCCTCGCACTGTCTCTTGTGCCGACATCTTAGCCATAGCCTCCAAAGAATCTGTCGTACTGGCTGGAGGGCCGAGCTGGGTTGTGCCACTAGGGCGAAGAGACAGCAGGACAGCCAATAGAGAAGGAGCCTCAAACAACCTTGCCAGTCCCTTCGAAGATCTGGATACACTCAAAGCCAAGTTTGGTGTTTTTGGCCTCGATTCCACCGATCTTGTGGCTTTGTCTGGAGCACATACATTTGGGCGTTCAAGATGCGCATTTTTCAGCCAACGATTGGCCAACTTCAACGGCACGAACAGGCCAGATCCAACACTAGACCCAGCCTACAGAGAGCAGCTCCGAAGAATTTGCTCTAGTGGCTCAGAGACACGAGCCAATTTCGACCCAACGACTCCAGACAAATTTGACAAAAACTATTATTCCAACCTTCAGGGGCTTCGGGGGCTGCTGCAGAGCGATCAAGAACTGTTCTCAACTCGCGGGGCTGACACGGTGGCCATTGTGAACCGTTTTGCCAAAAGCCAAGGCCAGTTCTTTAAAAGTTTTGGTGCGTCTATGATTAAAATGGGAAACATTACACCTTTAACTGGAACTAAAGGAGAGATTAGATTGAACTGTAGGAGGGTGAATCCAACTAGACCCAGGGGTGATGAGGGTCATGATGTTATGTAA 1023 48.78 MKMASSKFGVVLALFWLVGLMVEGSLAQLNPSFYAKTCPNLPKIVNGVVAQALRTDARAGAKLIRLHFHDCFVDGCDASVLLENAPGIDSELDAPGNQGIQGLNIVDDIKSAVEKACPRTVSCADILAIASKESVVLAGGPSWVVPLGRRDSRTANREGASNNLASPFEDLDTLKAKFGVFGLDSTDLVALSGAHTFGRSRCAFFSQRLANFNGTNRPDPTLDPAYREQLRRICSSGSETRANFDPTTPDKFDKNYYSNLQGLRGLLQSDQELFSTRGADTVAIVNRFAKSQGQFFKSFGASMIKMGNITPLTGTKGEIRLNCRRVNPTRPRGDEGHDVM 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37581212 37582504 + CcPI632755_02g025240.1 Cco02g2524 173281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2524 340 FunFam Peroxidase 165 306 - -
Cco02g2524 340 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 259 276 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 243 258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Plant peroxidase signature 301 314 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Cco02g2524 340 SUPERFAMILY Heme-dependent peroxidases 28 328 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Haem peroxidase superfamily signature 245 260 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 Pfam Peroxidase 46 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 Gene3D - 33 327 - -
Cco02g2524 340 PANTHER PEROXIDASE 72-RELATED 19 326 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 CDD secretory_peroxidase 28 326 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2524 340 FunFam Peroxidase 32 177 - -
Cco02g2524 340 ProSiteProfiles Plant heme peroxidase family profile. 28 327 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2524 340 Gene3D Peroxidase, domain 2 165 306 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2524 Cco-Chr2:37581212 Cco02g2529 Cco-Chr2:37631587 1.00E-125 dispersed
Cco02g2523 Cco-Chr2:37574647 Cco02g2524 Cco-Chr2:37581212 4.80E-120 tandem
Cco02g2524 Cco-Chr2:37581212 Cco02g2525 Cco-Chr2:37589944 2.70E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2524 K00430 - csv:101211507 575.089