Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2526 ATGGCTTCCCTTAAATTCCTAGCCATTGTTGTGGTGGCTGCTTTGATGCTATCACCTTCTCACGCCCAGCTTTCCCCTTTCTTCTACGCCCAATCATGCCCTAAGCTGCCTTTCCTTGTTCTCAACGTGGTTGCCCGAGCTCTACAAACCGATGATCGAGCTGCTGCCAAGCTCATTCGCCTCCATTTTCATGATTGTTTCGTTAATGGGTGTGATGGATCTGTGCTATTGGTGGACGTACCGGGCGTCATCGATAGTGAATTAAACGGACCTCCAAATCAAGGAATCCAAGGGATGGACATTGTGGACAACATCAAAGCAACGGTTGAAAGTGCTTGTCCAGGCGTTGTTTCCTGTGCTGACATCTTAGCCATTTCTGCTCAAATCTCGGTTTTCTTGTCGGGAGGACCAATGTGGGCAGTACCAATGGGAAGAAGAGACAGTAGGATAGCCAATAGAACCGGAACCTCAAACCTGCCGGGTCCCTCAGAAAGTCTAGACGGACTTAAAGCCAAGTTTGGGGTTCATGGGCTTGATTCTACCGATCTGGTGGCTCTATCAGGAGCCCACACGTTCGGCCGATCAAGATGCCTCTTCTTCAGTGACCGCTTCAACAACTTCAACAACACCGGCAGACCCGACCCCACACTTAACCCAACATACAGGGAGCGGCTTCGAAGACAATGTACATCCCAACAAACACGAGTGAATTTCGATCCAATCACACCCACTAGATTCGACAAGGCCTATTACACCAATCTCGTCAGCTTGAGGGGGCTTCTCCAAAGCGACCAAGAGCTGTTCTCAACCCCCAGGGCTGATACCACGGCCATCGTCAGAACTTTCGCCGCCAACCAACCTGCCTTCTTTAAACAATTTGTGAAATCCATGATCAAAATGGGCAATCTCAAGCCTCCCCCTGGCATTGCTTCGGAAGTCAGATTGGATTGTAAGAGGGTCAATCGGGCCAGAGCCTACGACGTTATGTAA 990 49.9 MASLKFLAIVVVAALMLSPSHAQLSPFFYAQSCPKLPFLVLNVVARALQTDDRAAAKLIRLHFHDCFVNGCDGSVLLVDVPGVIDSELNGPPNQGIQGMDIVDNIKATVESACPGVVSCADILAISAQISVFLSGGPMWAVPMGRRDSRIANRTGTSNLPGPSESLDGLKAKFGVHGLDSTDLVALSGAHTFGRSRCLFFSDRFNNFNNTGRPDPTLNPTYRERLRRQCTSQQTRVNFDPITPTRFDKAYYTNLVSLRGLLQSDQELFSTPRADTTAIVRTFAANQPAFFKQFVKSMIKMGNLKPPPGIASEVRLDCKRVNRARAYDVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37594112 37595378 + CcPI632755_02g025260.1 Cco02g2526 173283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2526 329 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Plant peroxidase signature 33 52 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Plant peroxidase signature 295 308 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Plant peroxidase signature 57 77 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 ProSitePatterns Peroxidases active site signature. 55 66 IPR019794 GO:0004601(InterPro)
Cco02g2526 329 Gene3D Peroxidase, domain 2 160 300 - -
Cco02g2526 329 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Haem peroxidase superfamily signature 55 69 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 FunFam Peroxidase 27 171 - -
Cco02g2526 329 SUPERFAMILY Heme-dependent peroxidases 23 321 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 ProSiteProfiles Plant heme peroxidase family profile. 23 321 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 Gene3D - 28 321 - -
Cco02g2526 329 FunFam Peroxidase 160 300 - -
Cco02g2526 329 Pfam Peroxidase 41 285 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 PANTHER PEROXIDASE 72-RELATED 9 320 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2526 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Cco02g2526 329 CDD secretory_peroxidase 23 320 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2526 Cco-Chr2:37594112 Cco02g2529 Cco-Chr2:37631587 3.50E-107 dispersed
Cco02g2525 Cco-Chr2:37589944 Cco02g2526 Cco-Chr2:37594112 1.60E-136 tandem
Cco02g2526 Cco-Chr2:37594112 Cco02g2527 Cco-Chr2:37602295 3.50E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2526 K00430 - csv:101211989 575.089