Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2527 ATGGGTTCTTTCAGTTTCTTGCTTTTGTTTGTGGGTGTTTTGTTTGGAAGGTCTTATGCCCAACTCACCGAGAACTTCTACGACCAAACTTGCCCTCGTCTCCCTAACATTGTCCGCCGTGAGGTCAAGAGAGCTATCGAAACTGACATCCGGGCCGGGGCGAAACTCATTCGCTTCCATTTCCACGATTGCTTCGTCCAAGGTTGCGACGGTTCTGTTTTGCTAGAGGATGCTCCTGGCATAGATAGTGAGCTGAACGGACTTGGAAATTTAGGAATCCAAGGACTGGAGATTGTTGATGCTATCAAAGCCGCTGTCGAGAGGGAATGTCCCGGCATAGTCTCATGCGCCGACATCCTAGCTCAAGCCTCTAAAGACTCTGTGGACGTGCAAGGAGGGCCCAGTTGGAGAGTTTTATACGGAAGAAGAGATAGCAGAACAGCCAATAGAACAGGGGCTGATGAACTCCCAAGTCCCTTCGAAAATCTTGACCAACTCAAAAGAAAGTTCGAAGTCGTTGGGTTGAATTCCACTGATCTTGTTGCTCTATCAGGAGCACATACGTTTGGTCGGTCGAGATGCATGTTCTTCAGTGACCGTTTGTCCAACTTCAGTGGGAGTGGGCAGCCAGATCCGACCCTGGATCCAACCTACAGGCAAGAACTGGAAAGAGCTTGTACAAGTCCAGAAACACGAGTGAATTTCGATCCAACAACACCGGACACATTTGACAAAAATTACTACACCAATCTTCAAGCCAATCGAGGTCTTCTTCATAGCGACCAAGTTTTGGTCTCTACTGGAGGGGCCGACACAATTGCCACTGTCAACCTTCTTGGATCGCGAGAAGGCACCTTCTTTAGACAATTTCGGCTCTCCATGATTAAGATGGGAAATATTAGACCCTTAACCGGAACCCAAGGGGAAATCAGAAGAAACTGCAGGAGGGTCAATGACTTGGGAGGTGAAGCAGGACATGATGTTATGTAA 990 48.08 MGSFSFLLLFVGVLFGRSYAQLTENFYDQTCPRLPNIVRREVKRAIETDIRAGAKLIRFHFHDCFVQGCDGSVLLEDAPGIDSELNGLGNLGIQGLEIVDAIKAAVERECPGIVSCADILAQASKDSVDVQGGPSWRVLYGRRDSRTANRTGADELPSPFENLDQLKRKFEVVGLNSTDLVALSGAHTFGRSRCMFFSDRLSNFSGSGQPDPTLDPTYRQELERACTSPETRVNFDPTTPDTFDKNYYTNLQANRGLLHSDQVLVSTGGADTIATVNLLGSREGTFFRQFRLSMIKMGNIRPLTGTQGEIRRNCRRVNDLGGEAGHDVM 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37602295 37603470 + CcPI632755_02g025270.1 Cco02g2527 173284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2527 329 PRINTS Haem peroxidase superfamily signature 53 67 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Haem peroxidase superfamily signature 179 194 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Haem peroxidase superfamily signature 236 251 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 FunFam Peroxidase 157 297 - -
Cco02g2527 329 Gene3D Peroxidase, domain 2 157 297 - -
Cco02g2527 329 FunFam Peroxidase 25 170 - -
Cco02g2527 329 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Plant peroxidase signature 55 75 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Plant peroxidase signature 178 190 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Plant peroxidase signature 31 50 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Plant peroxidase signature 234 249 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Plant peroxidase signature 250 267 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 ProSiteProfiles Plant heme peroxidase family profile. 21 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 PANTHER PEROXIDASE 72-RELATED 10 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 SUPERFAMILY Heme-dependent peroxidases 21 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 CDD secretory_peroxidase 21 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2527 329 Pfam Peroxidase 38 272 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2527 329 Gene3D - 26 318 - -
Cco02g2527 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 179 189 IPR019793 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2527 Cco-Chr2:37602295 Cco02g2529 Cco-Chr2:37631587 1.30E-141 dispersed
Cco02g2526 Cco-Chr2:37594112 Cco02g2527 Cco-Chr2:37602295 3.50E-107 tandem
Cco02g2527 Cco-Chr2:37602295 Cco02g2528 Cco-Chr2:37609269 5.50E-177 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2527 K00430 - csv:101212230 491.5