Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2530 ATGGCTTCCTTCTTCAAAGTTGTTTCTTTCCTTTTGTTTGTGGGGTTGATGGTTGAAGCTTCTAAAGCTCAGCTCTGTCCCACGTTTTACGACGACTCATGCCCCGACGTATCCAACATTGTGCGCAGTGTAGTGCAGCAGGCTTTGGAAACCGACGACCGTGCTGGTGCCAGACTCATTCGCCTTCATTTCCACGACTGCTTTGTTGATGGGTGCGATGGGTCAGTTTTACTAGTGAACCAAACCGGCGTAGTGAGTGAGCTTGGCGCTCCTGGAAATGCCAATATTACAGGATTTAACATTGTTGATGACATTAAAGCCGCACTCGAGGAGGCTTGTCCTGGTGTTGTTTCTTGTGCCGACATTTTAGCCATAGCTTCTGTGGAAGCAGTTTCCTTGGCAGGAGGACCGTGTTGGGAGGTTCAACTGGGAAGAAGGGACAGCAGAACGGCTAACTTACAAGGCGCAATCGATGGGCTTCCAAGTCCTTTCGAAAATGTTACAGAACTTGAACGCAAGTTCGGTAGAGTGGGTCTTGATTCTACCGATCTTGTTGCCTTATCTGGGGCCCACACATTCGGGAGATCAAGATGCCGATTTTTCGACGGACGTTTGAACGTTTCAAATCCAGACGCCACGCTGGACGCCACGTACGCACAGCAGCTCCGTGAGGCTTGCAGTGGGAGCAGAGACACGTTTGTAAACCTGGACCCCACCACTCCCGACGACTTCGACAACAACTACTACACAAACCTTCAGTCCAACTCCGGTCTTCTCACCAGCGACCAAGTCCTCTTCTCCACTCCCGGCGCCGACACCGTGGACACCGTCAACATCTTCGCCGGCAGCCAGCAGCAGTTCTTCGACAGCTTCGGCCAGTCCATGATCAACATGGGAAATATCAGCCCTTTAACCGGTGACCAGGGAGAAATTAGGTCCAATTGCCGAAGGCTCAACTGA 960 51.56 MASFFKVVSFLLFVGLMVEASKAQLCPTFYDDSCPDVSNIVRSVVQQALETDDRAGARLIRLHFHDCFVDGCDGSVLLVNQTGVVSELGAPGNANITGFNIVDDIKAALEEACPGVVSCADILAIASVEAVSLAGGPCWEVQLGRRDSRTANLQGAIDGLPSPFENVTELERKFGRVGLDSTDLVALSGAHTFGRSRCRFFDGRLNVSNPDATLDATYAQQLREACSGSRDTFVNLDPTTPDDFDNNYYTNLQSNSGLLTSDQVLFSTPGADTVDTVNIFAGSQQQFFDSFGQSMINMGNISPLTGDQGEIRSNCRRLN 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37640777 37642903 + CcPI632755_02g025300.1 Cco02g2530 173287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2530 319 PRINTS Plant peroxidase signature 251 268 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Plant peroxidase signature 235 250 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 SUPERFAMILY Heme-dependent peroxidases 24 319 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 ProSiteProfiles Plant heme peroxidase family profile. 24 319 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 Gene3D Peroxidase, domain 2 161 298 - -
Cco02g2530 319 PANTHER PEROXIDASE 72-RELATED 14 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 CDD secretory_peroxidase 24 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2530 319 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cco02g2530 319 Gene3D - 29 319 - -
Cco02g2530 319 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Cco02g2530 319 PRINTS Haem peroxidase superfamily signature 237 252 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 Pfam Peroxidase 41 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2530 319 FunFam Peroxidase 161 298 - -
Cco02g2530 319 FunFam Peroxidase 28 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2528 Cco-Chr2:37609269 Cco02g2530 Cco-Chr2:37640777 9.60E-105 dispersed
Cco02g2530 Cco-Chr2:37640777 Cco11g0594 Cco-Chr11:6349590 6.50E-74 dispersed
Cco02g2529 Cco-Chr2:37631587 Cco02g2530 Cco-Chr2:37640777 1.00E-106 tandem
Cco02g2530 Cco-Chr2:37640777 Cco02g2531 Cco-Chr2:37650492 2.20E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2530 K00430 - csv:101212717 528.094