Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2531 ATGGCTTCTTTTAAAGCTATTATTCCTTTGATATTGTGTGTTTGTTTGATGGTTGGCTCTGTCAGTGCTCAACTTAGCTCTACGTTTTACGATACCACATGTCCCAATGTATCAAGTGTTGTGCATGGTGTTGTGGAGCAAGCTCTTCAAAATGATGATAGAGCCGGTGCCAAACTCATTCGTCTTCATTTCCACGATTGTTTTGTCGATGGTTGTGATGGGTCAGTATTGTTAGAGGACCAAGATGGTATAGTGAGCGAGTTGGGTGCACCTGGAAACGGAGGCATCACGGGATTCAACATTGTCAATGACATCAAAACTGCAGTAGAAAATGTTTGTCCAGGCATCGTCTCCTGTGCTGACATTCTAGCCCTTTCTTCTCGAGATGCCGTCACCTTGGCAGGAGGGCAAGGCTGGACGGTTCAATTGGGAAGAAGAGATAGTAGAACAGCTAATTTGCAAGGAGCCAGGGATAGGCTCCCAAGTCCTTTTGAGAATCTATCTCAACTTCAACAGAAGTTTAGGGATGTTCAACTTGACGACGATGCCGATCTTGTTGCTCTTTCAGGTGCACACACATTCGGGCGTTCGAGATGCAGATTTTTCGACGGACGGCTAAACACTTCGAACCCAGACCCGACGCTGGACTCGACGTACGCGGATCAGCTCCGGCAAAGTTGTCAGGCAGGGCGAGACACGTTCGTGAATCTGGACCCGACGACGCCGAACACGTTCGACAGGAACTACTTCACAAATCTTCAAAACAACCAAGGGCTTTTGGGAAGTGACCAAGTTCTATTATCCACCGTCGGAGCTTCAACTATCAGTACCGTCAACAACTTCGCCGGCAGCCAGAGCGCATTCTTCACCGCCTTTGCTCAGTCAATGATTAATATGGGAAATCTCAGCCCTTTGACTGGGACTAGTGGAGAAATCAGGACCAATTGCAGAAGGCTGAATTAA 963 47.56 MASFKAIIPLILCVCLMVGSVSAQLSSTFYDTTCPNVSSVVHGVVEQALQNDDRAGAKLIRLHFHDCFVDGCDGSVLLEDQDGIVSELGAPGNGGITGFNIVNDIKTAVENVCPGIVSCADILALSSRDAVTLAGGQGWTVQLGRRDSRTANLQGARDRLPSPFENLSQLQQKFRDVQLDDDADLVALSGAHTFGRSRCRFFDGRLNTSNPDPTLDSTYADQLRQSCQAGRDTFVNLDPTTPNTFDRNYFTNLQNNQGLLGSDQVLLSTVGASTISTVNNFAGSQSAFFTAFAQSMINMGNLSPLTGTSGEIRTNCRRLN 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37650492 37652106 + CcPI632755_02g025310.1 Cco02g2531 173288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2531 320 Gene3D Peroxidase, domain 2 161 299 - -
Cco02g2531 320 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 SUPERFAMILY Heme-dependent peroxidases 24 320 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 CDD secretory_peroxidase 24 318 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco02g2531 320 PANTHER PEROXIDASE 72-RELATED 14 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 Pfam Peroxidase 42 282 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 Gene3D - 29 320 - -
Cco02g2531 320 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601(InterPro)
Cco02g2531 320 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Cco02g2531 320 FunFam Peroxidase 161 299 - -
Cco02g2531 320 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Plant peroxidase signature 294 307 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 ProSiteProfiles Plant heme peroxidase family profile. 24 320 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco02g2531 320 FunFam Peroxidase 28 177 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2529 Cco-Chr2:37631587 Cco02g2531 Cco-Chr2:37650492 6.90E-103 dispersed
Cco02g2531 Cco-Chr2:37650492 Cco11g0594 Cco-Chr11:6349590 8.20E-77 dispersed
Cco02g2530 Cco-Chr2:37640777 Cco02g2531 Cco-Chr2:37650492 2.20E-130 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2531 K00430 - csv:101212957 510.76