Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2532 ATGTTTCAAGAAGACATCCTCCAACTTATTTTGGAGTCTTATGATGCAAGTGGTGGTCTGTTGGCTGGGTATTGGAAGTTGAATGTGGATGTTGCTTGGTTAAATAAGAAAGGGATGGGTAGGCTTTGGTGGATTCCCGACACACGGCCATTGCTTTGCTTCACTTCACCACCCACCCCTTTCTTCTTTCTCTTTCCATTTCCTTTTGGGGCCAAACAATTCTATCAAGGGTTGTTCAGCGGCGTAAACCTCATTTCCTGCTGTTTTCTGCTCGATCACTCTCTAACCCTTCAATTTTCCCATCTGGATGATTGTATGAGTACCATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTATCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACAAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAACAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGACGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGACAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGGAACACGAGCTTAACGTAG 1308 45.57 MFQEDILQLILESYDASGGLLAGYWKLNVDVAWLNKKGMGRLWWIPDTRPLLCFTSPPTPFFFLFPFPFGAKQFYQGLFSGVNLISCCFLLDHSLTLQFSHLDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGITFRKASTGGFARSRNDVHKLLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYNKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVRNTSLT 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37658051 37663957 + CcPI632755_02g025320.1 Cco02g2532 173289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2532 435 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 293 423 IPR008974 GO:0005515(InterPro)
Cco02g2532 435 FunFam E3 ubiquitin-protein ligase SINAT3 232 290 - -
Cco02g2532 435 SUPERFAMILY RING/U-box 174 224 - -
Cco02g2532 435 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 132 425 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cco02g2532 435 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 182 217 IPR049548 -
Cco02g2532 435 Pfam Sina, TRAF-like domain 326 423 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cco02g2532 435 ProSiteProfiles Zinc finger SIAH-type profile. 235 295 IPR013010 GO:0008270(InterPro)
Cco02g2532 435 FunFam E3 ubiquitin-protein ligase SINAT5-like 291 423 - -
Cco02g2532 435 SUPERFAMILY TRAF domain-like 235 426 - -
Cco02g2532 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 234 IPR013083 -
Cco02g2532 435 ProSiteProfiles Zinc finger RING-type profile. 182 218 IPR001841 -
Cco02g2532 435 Pfam Sina, zinc finger 231 306 - -
Cco02g2532 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 290 IPR013083 -
Cco02g2532 435 CDD RING-HC_SIAHs 180 218 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2532 Cco-Chr2:37658051 Cco04g0173 Cco-Chr4:4180872 7.60E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2532 K04506 - csv:101213438 668.692