Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2532 | ATGTTTCAAGAAGACATCCTCCAACTTATTTTGGAGTCTTATGATGCAAGTGGTGGTCTGTTGGCTGGGTATTGGAAGTTGAATGTGGATGTTGCTTGGTTAAATAAGAAAGGGATGGGTAGGCTTTGGTGGATTCCCGACACACGGCCATTGCTTTGCTTCACTTCACCACCCACCCCTTTCTTCTTTCTCTTTCCATTTCCTTTTGGGGCCAAACAATTCTATCAAGGGTTGTTCAGCGGCGTAAACCTCATTTCCTGCTGTTTTCTGCTCGATCACTCTCTAACCCTTCAATTTTCCCATCTGGATGATTGTATGAGTACCATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACCGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTATCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACAAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAACAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGACATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGCTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGACGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGACAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGGAACACGAGCTTAACGTAG | 1308 | 45.57 | MFQEDILQLILESYDASGGLLAGYWKLNVDVAWLNKKGMGRLWWIPDTRPLLCFTSPPTPFFFLFPFPFGAKQFYQGLFSGVNLISCCFLLDHSLTLQFSHLDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGITFRKASTGGFARSRNDVHKLLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYNKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVRNTSLT | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 37658051 | 37663957 | + | CcPI632755_02g025320.1 | Cco02g2532 | 173289 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2532 | 435 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 293 | 423 | IPR008974 | GO:0005515(InterPro) | |
Cco02g2532 | 435 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 232 | 290 | - | - | |
Cco02g2532 | 435 | SUPERFAMILY | RING/U-box | 174 | 224 | - | - | |
Cco02g2532 | 435 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 132 | 425 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Cco02g2532 | 435 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 182 | 217 | IPR049548 | - | |
Cco02g2532 | 435 | Pfam | Sina, TRAF-like domain | 326 | 423 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cco02g2532 | 435 | ProSiteProfiles | Zinc finger SIAH-type profile. | 235 | 295 | IPR013010 | GO:0008270(InterPro) | |
Cco02g2532 | 435 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 291 | 423 | - | - | |
Cco02g2532 | 435 | SUPERFAMILY | TRAF domain-like | 235 | 426 | - | - | |
Cco02g2532 | 435 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 121 | 234 | IPR013083 | - | |
Cco02g2532 | 435 | ProSiteProfiles | Zinc finger RING-type profile. | 182 | 218 | IPR001841 | - | |
Cco02g2532 | 435 | Pfam | Sina, zinc finger | 231 | 306 | - | - | |
Cco02g2532 | 435 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 290 | IPR013083 | - | |
Cco02g2532 | 435 | CDD | RING-HC_SIAHs | 180 | 218 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2532 | Cco-Chr2:37658051 | Cco04g0173 | Cco-Chr4:4180872 | 7.60E-134 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2532 | K04506 | - | csv:101213438 | 668.692 |