Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2566 ATGAGAAGATCAGGCGTAAACCAACCAAAAGTCAAGCGTCTTGTTGGAAAATACGAAATTGGTCGAACAATTGGTGAGGGTACATTTGCGAAAGTGAAAATTGCCAAAAATTCGGAGACTGGGGATCATGTAGCAATAAAGATTCTCGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATTGCGACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTGTTTGAGGTGATGGGGAGCAAAACCAAGATATTTATTGTTTTGGAATTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAATCTTAAAGTGTCTGATTTTGGATTGAGTGCACTGTCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAAGGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTTATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATCAACCTTTATAAAAAGATCTCGGCTGCTGAATTTACTTGTCCTCCTTGGCTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCTGTTTTTGAGGAGCCTAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTCAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCGAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAATTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATCGAAGAAGCTGCGAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTCTGCAAGTTGCACCTTCTGTCCATGTGGTTGAGATGAGAAAAGCAAAGGGAGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACGGAGGAAGACATGCAAGAAACAAAGTGA 1335 40.6 MRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGDHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLKDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETK 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37969250 37974751 + CcPI632755_02g025660.1 Cco02g2566 173323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2566 444 ProSiteProfiles NAF domain profile. 311 335 IPR018451 GO:0007165(InterPro)
Cco02g2566 444 CDD STKc_SnRK3 17 272 - -
Cco02g2566 444 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Cco02g2566 444 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2566 444 SMART serkin_6 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2566 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco02g2566 444 FunFam Non-specific serine/threonine protein kinase 11 314 - -
Cco02g2566 444 Gene3D Kinase associated domain 1, KA1 310 435 - -
Cco02g2566 444 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 423 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco02g2566 444 FunFam Non-specific serine/threonine protein kinase 310 435 - -
Cco02g2566 444 SUPERFAMILY Protein kinase-like (PK-like) 14 301 IPR011009 -
Cco02g2566 444 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Cco02g2566 444 Gene3D Transferase(Phosphotransferase) domain 1 98 280 - -
Cco02g2566 444 Pfam NAF domain 313 372 IPR004041 GO:0007165(InterPro)
Cco02g2566 444 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco02g2566 444 CDD CIPK_C 317 431 - -
Cco02g2566 444 FunFam Non-specific serine/threonine protein kinase 9 97 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2566 Cco-Chr2:37969250 Cco03g0793 Cco-Chr3:8354474 3.40E-182 dispersed
Cco06g0047 Cco-Chr6:423643 Cco02g2566 Cco-Chr2:37969250 5.40E-73 transposed
Cco11g0072 Cco-Chr11:746081 Cco02g2566 Cco-Chr2:37969250 4.30E-68 transposed
Cco10g1796 Cco-Chr10:31543545 Cco02g2566 Cco-Chr2:37969250 1.00E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86625 PF00069 Pkinase 1.00E-72 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2566 - - - 0.0