Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco02g2568 | ATGTCACACTTCTCTTCCTATATCCCTCTCTGTTGCAACCTCGCGCCGCCAGTCCGAGGCTCTTTGGCTACTCCCTTCACTCCTGGCCTCAATTCCCAATTCAGGGTCTTCGGGGAAGGGAGATTACGCGTCCAAGGGAAGACTATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGTGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGGCAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCACAATGCAAATTTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTGGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGAGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTCTAGAACTGTTGGAGAAGATGCTTACGCTTGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACGGATCCATTACCATGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATCCACAGCATGCACGCCTTCCACCTATTCAGCAATCGGGGCAAGCACATGCACAGATGCGACCAGTGCCTAACCAACCAATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGCGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGCTGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCTGGAGGCGGCGGAGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCCGGTACTGGCCGTGGCTCCAATGTGATGGGCGGAAATCGCAACCAACAATATGGGTGGCAACAACAATGA | 1695 | 46.96 | MSHFSSYIPLCCNLAPPVRGSLATPFTPGLNSQFRVFGEGRLRVQGKTMAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGGGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQQ | 564 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 37980105 | 37986225 | - | CcPI632755_02g025680.1 | Cco02g2568 | 173325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco02g2568 | 564 | ProSitePatterns | Protein kinases ATP-binding region signature. | 79 | 102 | IPR017441 | GO:0005524(InterPro) | |
Cco02g2568 | 564 | MobiDBLite | consensus disorder prediction | 535 | 564 | - | - | |
Cco02g2568 | 564 | SUPERFAMILY | Protein kinase-like (PK-like) | 67 | 380 | IPR011009 | - | |
Cco02g2568 | 564 | FunFam | Cyclin-dependent kinase C-2 | 170 | 412 | - | - | |
Cco02g2568 | 564 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 207 | 219 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco02g2568 | 564 | MobiDBLite | consensus disorder prediction | 383 | 564 | - | - | |
Cco02g2568 | 564 | ProSiteProfiles | Protein kinase domain profile. | 73 | 372 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2568 | 564 | Gene3D | Transferase(Phosphotransferase) domain 1 | 170 | 412 | - | - | |
Cco02g2568 | 564 | MobiDBLite | consensus disorder prediction | 385 | 414 | - | - | |
Cco02g2568 | 564 | SMART | serkin_6 | 73 | 372 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2568 | 564 | Pfam | Protein kinase domain | 73 | 372 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco02g2568 | 564 | CDD | STKc_CDK9_like | 73 | 372 | - | - | |
Cco02g2568 | 564 | PANTHER | CELL DIVISION PROTEIN KINASE | 73 | 372 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Cco02g2568 | 564 | FunFam | Cyclin-dependent kinase C-2 | 60 | 169 | - | - | |
Cco02g2568 | 564 | MobiDBLite | consensus disorder prediction | 421 | 448 | - | - | |
Cco02g2568 | 564 | MobiDBLite | consensus disorder prediction | 476 | 495 | - | - | |
Cco02g2568 | 564 | Gene3D | Phosphorylase Kinase; domain 1 | 60 | 169 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2568 | Cco-Chr2:37980105 | Cco10g1398 | Cco-Chr10:27029324 | 4.10E-273 | dispersed | |
Cco02g2568 | Cco-Chr2:37980105 | Cco02g1891 | Cco-Chr2:31790860 | 7.60E-94 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86627 | PF00069 | Pkinase | 5.30E-75 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco02g2568 | K08819 | - | csv:101220936 | 983.015 |