Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2578 ATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTTCATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGATCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGCTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCCATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAATGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCTCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 849 46.41 MPTSLVPSHRPELLTVAVAVVAVGVATAYYFFITKKSKPKGCLDPNNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFITEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGHPPQMQFLF 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38044606 38047472 - CcPI632755_02g025780.1 Cco02g2578 173335

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2578 282 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 138 277 IPR039261 -
Cco02g2578 282 Pfam Oxidoreductase FAD-binding domain 51 149 IPR008333 -
Cco02g2578 282 CDD cyt_b5_reduct_like 51 282 - -
Cco02g2578 282 Gene3D - 140 282 IPR039261 -
Cco02g2578 282 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 150 IPR017927 GO:0016491(InterPro)
Cco02g2578 282 PRINTS Cytochrome B5 reductase signature 196 207 - -
Cco02g2578 282 PRINTS Cytochrome B5 reductase signature 77 88 - -
Cco02g2578 282 PRINTS Cytochrome B5 reductase signature 135 149 - -
Cco02g2578 282 PRINTS Cytochrome B5 reductase signature 99 106 - -
Cco02g2578 282 PRINTS Cytochrome B5 reductase signature 158 177 - -
Cco02g2578 282 PRINTS Cytochrome B5 reductase signature 252 260 - -
Cco02g2578 282 FunFam NADH-cytochrome b5 reductase 41 140 - -
Cco02g2578 282 FunFam NADH-cytochrome b5 reductase 140 282 - -
Cco02g2578 282 SUPERFAMILY Riboflavin synthase domain-like 42 152 IPR017938 -
Cco02g2578 282 Pfam Oxidoreductase NAD-binding domain 159 265 IPR001433 GO:0016491(InterPro)
Cco02g2578 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 207 IPR001709 GO:0016491(InterPro)
Cco02g2578 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 252 260 IPR001709 GO:0016491(InterPro)
Cco02g2578 282 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 158 177 IPR001709 GO:0016491(InterPro)
Cco02g2578 282 PANTHER NADH-CYTOCHROME B5 REDUCTASE 17 282 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cco02g2578 282 Gene3D Translation factors 38 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2578 K00326 - - csv:101219272 505.753
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2578 Cco-Chr2:38044606 Cco04g0671 Cco-Chr4:21158968 1.30E-118 dispersed
Cco02g2578 Cco-Chr2:38044606 Cco11g1602 Cco-Chr11:28873764 2.80E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
Cco05g0387 . 1 133 NADPH P450 reductases AT5G53560 67.7 4.3e-51 197.6
Cco01g0024 . 23 138 NADPH P450 reductases AT5G53560 78.4 5.6e-51 197.2
Cco06g0811 . 1 133 NADPH P450 reductases AT5G53560 64.7 1.3e-47 186.0
Cco07g0190 . 4 131 NADPH P450 reductases AT5G53560 62.5 1.0e-44 176.4
Cco05g0387 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.3e-47 185.3
Cco06g0811 . 1 133 NADPH P450 reductases AT5G48810 60.7 2.5e-46 181.8
Cco07g0190 . 2 132 NADPH P450 reductases AT5G48810 62.4 2.1e-45 178.7
Cco01g0024 . 23 138 NADPH P450 reductases AT5G48810 61.9 3.5e-40 161.4
Cco05g0387 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.3e-51 196.8
Cco06g0811 . 22 133 NADPH P450 reductases AT2G32720 78.6 6.4e-47 183.7
Cco07g0190 . 21 132 NADPH P450 reductases AT2G32720 71.4 8.1e-42 166.8
Cco01g0024 . 18 137 NADPH P450 reductases AT2G32720 65.0 1.5e-40 162.5
Cco08g1201 . 1 130 NADPH P450 reductases AT1G26340 55.6 7.1e-38 153.7
Cco04g0671 . 2 281 NADPH P450 reductases AT5G17770 81.4 3.3e-130 461.5
Cco10g1651 . 2 280 NADPH P450 reductases AT5G17770 77.8 1.7e-126 449.1
Cco02g2578 . 10 282 NADPH P450 reductases AT5G17770 73.6 4.2e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86