Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco02g2595 ATGTGTTCTCAAATGGTGAATCCCATCGTTGATGTGGAAATTAAATGCCCCTTCTGCCGTAGCGGCTTTGTTGAGGAGATAGGTAACGGTATTTCTAGCGACAATAATGACAACAACAACAACAACAACGAGCTTGAATCCCATTTTGGATCGGAGCGAGCTTTGTCCCTCTGGGCTCCGATCTTGCTCGGTATGATGGGAAATCCCCGTGGGCGCCGAAGATTCAGGCATCTAGAGTTTGACGAAGATGATGATGATAATGAGCATGAGGATGGGGAGGGGAATCGTGTGAGTAGTGAGCCGACTGAGCTTGATTCAGTCATTAGGAGGAGGAGAAGTTCAGCTACCATTCTTCAGTTGCTCCAAGGTATCAGAGCTGGAATGGCAACTGCTGAATCAGAGAATAGTTACGAGGGAGAGAGGAGCAGAGAAAGAGAGCGGGTTATTCTTATAAATCCTTTCAATCAGACCATTGTAGTTCAAGGAGGCGAGAATCAAAATCAAAACCCCATTGGGTCGCTGGGTGATTATTTCGTAGGACCTGGTTTGGATTTGTTATTGCAACATCTAGCCGAAAATGATCCCAACAGATATGGGACTCCACCTGCACAGAAGGAGGCCGTTGATGCGCTGCCCACCGTGAGGGTTGAAATTCAGGATAGCCGTTTGCAATGTTCAGTGTGTTTGGATGAGTTTGAGGTGGATGAAGAAGCCAAGGAGATGCCATGTAAGCATAAATTTCATACAGGTTGTATTCTGCCATGGCTGGAGCTGCATAGTTCTTGCCCAGTTTGTAGGCATCAATTGCCTGGGGATGAATCCAAGCGTGATCCGGATGGTGGGTCTGCTAGGTTCATGGGCGACCTTAGTAATAATGCTAATGCTGGTAGTGACAGCGGGGAGATTGATGGGAGAAATGCATCTGGGACTGGGAGAAGGTTTTCTTTTCCGTGGCCCTTCAATGGCTTGTTTTCTTCGCAAGGAAACTCCTCGGGTGGAAGTGCATCTGATTCTCATTCTCAAAGGGACCACACTTCCATTTGA 1044 47.32 MCSQMVNPIVDVEIKCPFCRSGFVEEIGNGISSDNNDNNNNNNELESHFGSERALSLWAPILLGMMGNPRGRRRFRHLEFDEDDDDNEHEDGEGNRVSSEPTELDSVIRRRRSSATILQLLQGIRAGMATAESENSYEGERSRERERVILINPFNQTIVVQGGENQNQNPIGSLGDYFVGPGLDLLLQHLAENDPNRYGTPPAQKEAVDALPTVRVEIQDSRLQCSVCLDEFEVDEEAKEMPCKHKFHTGCILPWLELHSSCPVCRHQLPGDESKRDPDGGSARFMGDLSNNANAGSDSGEIDGRNASGTGRRFSFPWPFNGLFSSQGNSSGGSASDSHSQRDHTSI 347
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38210171 38211214 - CcPI632755_02g025950.1 Cco02g2595 173352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco02g2595 347 ProSiteProfiles Zinc finger RING-type profile. 225 266 IPR001841 -
Cco02g2595 347 CDD RING-H2_RNF126-like 224 266 - -
Cco02g2595 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 270 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Cco02g2595 347 Pfam Ring finger domain 224 266 IPR001841 -
Cco02g2595 347 MobiDBLite consensus disorder prediction 325 347 - -
Cco02g2595 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 272 IPR013083 -
Cco02g2595 347 SMART ring_2 225 265 IPR001841 -
Cco02g2595 347 MobiDBLite consensus disorder prediction 269 310 - -
Cco02g2595 347 MobiDBLite consensus disorder prediction 91 108 - -
Cco02g2595 347 FunFam E3 ubiquitin-protein ligase RING1-like 189 272 - -
Cco02g2595 347 SUPERFAMILY RING/U-box 218 271 - -
Cco02g2595 347 MobiDBLite consensus disorder prediction 287 304 - -
Cco02g2595 347 MobiDBLite consensus disorder prediction 81 108 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco02g2595 K11982 - - csv:101216515 522.702
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0859 Cco-Chr1:9184047 Cco02g2595 Cco-Chr2:38210171 6.60E-39 dispersed
Cco02g2595 Cco-Chr2:38210171 Cco10g2115 Cco-Chr10:34430058 9.30E-26 dispersed
Cco02g2595 Cco-Chr2:38210171 Cco01g1620 Cco-Chr1:28903923 1.10E-39 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g12 . . . . Bpe01g00362 . . . . . . . . . . Cpe05g00568 . . . . . . . . Cla02g02368 Cam02g2519 Cec02g2566 Cco02g2595 Clacu02g2493 Cmu02g2424 Cre02g2742 . . . . . . Chy05g00006 Cme05g00008 Blo08g00158 Blo14g00331 . . . . Bma07g00317 Bma11g00345 . Cmo02g01194 Cmo20g00005 Cma02g01160 Cma20g00005 Car02g00960 Car20g00003 Cpe16g00943 . Bhi10g00490 Tan07g0562 . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006217 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 0 1 1 1 1 1 2 1 38