Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0003 ATGTGTCGATCACATGAGGAATGGGCTTATGTAGCCCTTCTTCTCCTCTGCTTCTCCTCGTCCTTACTAATTGTCGGTGCAGCTGAGATGGTTACCCATCCTTCTGAAGTGGACGCTTTGCTAGTCATCAAAAGAAGTTTGATTGACCCTAATGGGAATCTGAGCAACTGGAACAAAGGAGACCCTTGTAATTCAAACTGGACTGGTGTTCTGTGCTACAATACCACATTGGATGATAACTATCTACATGTTGCTGAATTGCAACTTCTAAATATGAGTTTATCAGGAAATTTGTCACCTGCGCTTGGTCGTTTATCTTACCTGAAAGTTTTGGACTTTATGTGGAATGAGATAAATGGGGAAATACCAAGAGAGATAGGCAACCTAACATCCTTAGAACTGTTGCTTCTGAACGGGAACCAGTTGTCAGGTCCATTACCTGAAGATCTTGGTAATCTTCTACATTTGGACAGAATACAGATTGACCAGAACCATATATCAGGACCAATACCTAAGTCTTTTGCAAACTTAAAAGCAACAAAGCATTTTCACATGAATAACAACTCTATCAGTGGTGAAATCCCATCTGAGCTATCTGGATTGCCCAATCTTGTCCACTTCCTTCTTGACAATAACAACTTATCGGGGAAACTTCCACCTGAGTTGTTTCAATTGCCAAACTTAGAAATACTTCAACTTGACAACAACAACTTTAGTGGGACCACAATACCAGATTCTTATGGAAATATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTACCTTGCAAGGATCCGTTCCAGATCTGAGCAGAATAAAGAACCTCGGTTATCTAGATCTAAGTTCCAATCAATTAAGTGGATTGATACCACGAAGTAAACTCTCTGAGAATATCACAACCATCATTTTATCCAACAACCATCTTACTGGCACCATACCATCCAGCCTTTCGGATCTACCACATCTTCAGAAATTGTCAGTTGCAAATAATTCATTGAACGGCTCTGTTCCATCCACCATATGGCAAAGCAGGACGCTCAATCCTCTGGACAGCCTTACAATAGAGTTGCAGAACAATAATTTTTCAAATATTGTGGGAAGCATCCATCTCCCTCTGAATGTTTCTGTCTGGCTTCATGGAAATCCTGCTTGTGCTAATAACAGCCTGCTGGACTTTTGTGGATCTGAGAGTGAGGATATAATTGACGTACCAACAAATAACACTCTTGGCTGTTCTGGCTCAATATGCCCACCTTCTTACGAATGTTACGCAGCGAAATGTCCCTCATCTTGTCTCTGTTCTGCGCCTCTTCTAATTGGATATCGTTTGAAAAGTCCTGGATTCTCACGTTTCAGTCCATATCAACAAATGTTTGAGGAGTATCTGACCAGTGGTCTTAAGGTACATCTTGAACAGTTGGACATTCGTTCTCCTGTGTGGGAAAAAGGACCTCGATTAAGAATGAACCTGAAGCTTTTCCCTCTATATGTTGCTGATAGCAATAGTTCTCACATGTTCAATGACAGCGAGGTTTTACGAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGATAGCGATATATTTGGACCATATGAACTTCTCAGCTTGTCAATATCAGATGTTTATAAGAACGTATTTGTCACACCATCATCTGATTCTACTATAAGTAAAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCTGGCGGAGCAATGTTATCTGCAGTTGTTTTTACTTTTATTATCAGATCACGTGTGAGAGGCCACCACATCTCAAGAAGGCGTCATCTGTCAAAAACCTCCATAAAGATTGAGGGTGTAAAGGAATTTGGTTACCGTGAAATGGCCCTAGCTACAAACAATTTTCATTATTCCACGGTAGTTGGTCAAGGTGGTTATGGAAAGGTCTACAAAGGAATTCTAGCAGATAGCACAACTGTTGCTATCAAACGTGCACAGGAGGGCTCACTACAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTATTGTCAAGGTTACACCACCGAAATCTTGTGGCTTTGATTGGCTATTGCGATGAGGAAGGGGAGCAGATGTTGGCTTATGAGTTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTCAATTCTGCAGAACCTTTGAGTTTTGCCACAAGATTAAAAGCTGCTCTGGGTGCAGCTAAGGGAATTCTGTACCTGCACACGGAAGCTGATCCTCCAATATTCCACCGAGATATCAAGTCCAGCAACATATTATTAGACTCTAAATATGTAGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTCTACCCGATGCAGAAGGCGATGTGCCTGCTCACGTATCAACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTTTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGCCTTGGGGTTGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTTAGGGAGGTTAACGGTGCATATCAGTCTGGAAAAATCTTCTCAATAATCGATGGTCGACTGGGATCTTATCCCGCTGAATGCGTAGAAAAATTTGTGACATTGGCGTTGAAGTGTTGCCAAGAAGATACGGATGCACGCCCTTCAATGGCTGAAGTTGTTCGAACGCTTGAAAGTATCTGGCTTATGCTGCCCGAGTCTGATACGAAAATTGCAGAGCCTTTGATCACAGATGTCATAAAAGTGACTACCCCCCCATCTTCATCATCCAACATGAACAACTATTACATATCAGAAGTCTCTGGCAGTGACCTCGTAAGTGGAGTAACTCCGACCATCACGCCCAGATAG 2862 41.68 MCRSHEEWAYVALLLLCFSSSLLIVGAAEMVTHPSEVDALLVIKRSLIDPNGNLSNWNKGDPCNSNWTGVLCYNTTLDDNYLHVAELQLLNMSLSGNLSPALGRLSYLKVLDFMWNEINGEIPREIGNLTSLELLLLNGNQLSGPLPEDLGNLLHLDRIQIDQNHISGPIPKSFANLKATKHFHMNNNSISGEIPSELSGLPNLVHFLLDNNNLSGKLPPELFQLPNLEILQLDNNNFSGTTIPDSYGNMTKLLKLSLRNCTLQGSVPDLSRIKNLGYLDLSSNQLSGLIPRSKLSENITTIILSNNHLTGTIPSSLSDLPHLQKLSVANNSLNGSVPSTIWQSRTLNPLDSLTIELQNNNFSNIVGSIHLPLNVSVWLHGNPACANNSLLDFCGSESEDIIDVPTNNTLGCSGSICPPSYECYAAKCPSSCLCSAPLLIGYRLKSPGFSRFSPYQQMFEEYLTSGLKVHLEQLDIRSPVWEKGPRLRMNLKLFPLYVADSNSSHMFNDSEVLRIVSKFTNWKIQDSDIFGPYELLSLSISDVYKNVFVTPSSDSTISKGALAGIILGAIAGGAMLSAVVFTFIIRSRVRGHHISRRRHLSKTSIKIEGVKEFGYREMALATNNFHYSTVVGQGGYGKVYKGILADSTTVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLAYEFMSNGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYVAKVADFGLSRLAPLPDAEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNGAYQSGKIFSIIDGRLGSYPAECVEKFVTLALKCCQEDTDARPSMAEVVRTLESIWLMLPESDTKIAEPLITDVIKVTTPPSSSSNMNNYYISEVSGSDLVSGVTPTITPR 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 48484 68849 - CcPI632755_03g000030.1 Cco03g0003 173362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0003 953 Gene3D Phosphorylase Kinase; domain 1 596 700 - -
Cco03g0003 953 FunFam Leucine-rich repeat protein kinase family protein 590 700 - -
Cco03g0003 953 Pfam Leucine rich repeat 155 214 IPR001611 GO:0005515(InterPro)
Cco03g0003 953 CDD STKc_IRAK 631 897 - -
Cco03g0003 953 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 701 910 - -
Cco03g0003 953 Gene3D Ribonuclease Inhibitor 189 294 IPR032675 -
Cco03g0003 953 SMART LRR_typ_2 273 298 IPR003591 -
Cco03g0003 953 SMART LRR_typ_2 320 344 IPR003591 -
Cco03g0003 953 SMART LRR_typ_2 129 153 IPR003591 -
Cco03g0003 953 SMART LRR_typ_2 201 225 IPR003591 -
Cco03g0003 953 SUPERFAMILY Protein kinase-like (PK-like) 611 926 IPR011009 -
Cco03g0003 953 Pfam Protein kinase domain 626 892 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0003 953 Gene3D Ribonuclease Inhibitor 295 384 IPR032675 -
Cco03g0003 953 ProSiteProfiles Leucine-rich repeat profile. 275 296 IPR001611 GO:0005515(InterPro)
Cco03g0003 953 SUPERFAMILY L domain-like 49 411 - -
Cco03g0003 953 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Cco03g0003 953 Pfam Leucine Rich Repeat 275 292 IPR001611 GO:0005515(InterPro)
Cco03g0003 953 Pfam Leucine Rich Repeat 227 249 IPR001611 GO:0005515(InterPro)
Cco03g0003 953 Pfam Leucine Rich Repeat 131 153 IPR001611 GO:0005515(InterPro)
Cco03g0003 953 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Cco03g0003 953 ProSitePatterns Serine/Threonine protein kinases active-site signature. 745 757 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0003 953 Gene3D Ribonuclease Inhibitor 33 188 IPR032675 -
Cco03g0003 953 Gene3D Transferase(Phosphotransferase) domain 1 701 907 - -
Cco03g0003 953 ProSiteProfiles Protein kinase domain profile. 625 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0003 953 SMART serkin_6 625 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0003 953 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 34 195 - -
Cco03g0003 953 PANTHER RECEPTOR-LIKE PROTEIN 55 54 895 - -
Cco03g0003 953 ProSitePatterns Protein kinases ATP-binding region signature. 631 653 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0003 Cco-Chr3:48484 Cco10g2277 Cco-Chr10:35617199 2.40E-92 dispersed
Cco11g1155 Cco-Chr11:22585727 Cco03g0003 Cco-Chr3:48484 1.20E-50 dispersed
Cco04g0794 Cco-Chr4:23232101 Cco03g0003 Cco-Chr3:48484 9.70E-183 transposed
Cco03g0003 Cco-Chr3:48484 Cco04g0807 Cco-Chr4:23394568 1.70E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86629 PF00069 Pkinase 1.40E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0003 - - - 0.0