Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0005 ATGGCCACCTTCTCTTGGTACCTCCTATGTTCTCTTTCATTTGTTCTCAATGCCTATTTGAAAGGAACCATGGCAGATGAAGTTCAGAATGATGTGAATGATCAGGTGGCAGATATTGCCCCCTTTGATCCCACTAAGAAGAAGAAGAAGAAGAAGGTTGTGCTTCAGGATCCAACCGATGAGATTGTTGACAAGTTAGCGGAGAAAACTGAAAGTTTGTCTGTTTCTGATGGTTTGGAGACTACCACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCTAGCTCCTTGAATGACGATGGTGCAGATGCTACGGAGGATTTGGAAGATCAAGCGGGGGAAAATGAAGACCGTGAGGGAATTGTTCTACAATATCGTTATCCTTGGGAGGGAAGTGATCGCGATTATGAATATGAGGAGCTTCTTGGACGGGTATTCAATATTCTTAGAGAGAATAATCCAGAGCTTGCAGGCGATAGGCGCAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTCAATTTCATGGATCTATGTAAAACGATGCACCGGCAGCCAGATCATGTTATGGCTTTCTTACTGGCCGAACTGGGAACCAGTGGCTCTCTTGATGGACAGCAGAGATTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATACGTCAAGCAGAACTTCTCTGAGACATTATTTGAGAGGGAATTAGAGGACTTGTTTCTAGATGAGATGGGAAAAAAAACTGTAAATGACTGCTATAGAATTGAGAAAGTCGGTGCATGTGTGGTTCTGGACGATCAGTTGCTCCAATTAAAGCTGGATTTGTGGCTCGTGTTGGCCGGAGGAACACTGGGACATGATTTGTACTTGTTCCTTTTTATCGAAGCCCGATGTTCTGATCTGACTGGTGGCGTGGAATCCTGGTTTCGTGGGAAGCATGTAAAGTCAACAAGGAAGGACCTCCACCACTTCCACTCGGTTTTGTGTCTCTTCCATCCCTCCAATACCATAATATGCGATACAGCCATTGAATTACATTTCACGTTGCTGAAGTTGCCGGGGGGAGGTTTCGTTGGCTGTCCGCAGTGGCTGGCCCTCTCTCTAGCCTGA 1158 44.73 MATFSWYLLCSLSFVLNAYLKGTMADEVQNDVNDQVADIAPFDPTKKKKKKKVVLQDPTDEIVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNDDGADATEDLEDQAGENEDREGIVLQYRYPWEGSDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVKQNFSETLFERELEDLFLDEMGKKTVNDCYRIEKVGACVVLDDQLLQLKLDLWLVLAGGTLGHDLYLFLFIEARCSDLTGGVESWFRGKHVKSTRKDLHHFHSVLCLFHPSNTIICDTAIELHFTLLKLPGGGFVGCPQWLALSLA 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 86268 95166 + CcPI632755_03g000050.1 Cco03g0005 173364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0005 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 54 241 IPR045196 GO:0001731(PANTHER)|GO:0001732(PANTHER)|GO:0003729(PANTHER)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005850(PANTHER)|GO:0006413(InterPro)|GO:0031369(PANTHER)
Cco03g0005 385 Gene3D - 136 244 - -
Cco03g0005 385 FunFam Eukaryotic translation initiation factor 2 subunit 136 244 - -
Cco03g0005 385 MobiDBLite consensus disorder prediction 103 117 - -
Cco03g0005 385 MobiDBLite consensus disorder prediction 86 122 - -
Cco03g0005 385 Pfam Domain found in IF2B/IF5 162 241 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco03g0005 385 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 138 240 IPR016189 GO:0003743(InterPro)|GO:0006413(InterPro)
Cco03g0005 385 SMART eIF2Bneu4 163 280 IPR002735 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0005 K03238 - csv:101220978 411.379