Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0008 ATGGCGGCTTCCAACCGCTGCATGAACACTTCTTGCAGAGCCGCCATCCCCCACGATTGGACCAAAGGATGGCCTCTGGGATCCGCCGGATACGCACATCTCTGCCTCAACTGCGGATCCGCTTATGAAAATTTAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGCACTAGCTGTGTGAGAAGATCTCGACTTGGAGTGATCCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTACTGTTGGCTTTCTGCCACCTACTTCTGTTGAGGATCAAGTGGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCAACCACTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGGAGAAAATCTCAGGAGCCCATTTGGAGAAGTTAGATCAAGCTTTTTAAATATGAATAAGCTACCTGTTAAATGCCAACCATCTGTTGGTTCATTAACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGAAAGAATCCCTAAGTCAGCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACTCCAAACTTTGTGGTACCCTTTTCAGGAAGTGCTGCTGAAGAGGATGAAAAGAGCATTCTGCCATTTCAACAGGGTCAAAGATCTCGTCCAATTTTTCCCAAGCTCATAAAAACTGGGACCGCAGTTAATTCCGAAGCAAGAAAGGGAATGGCACCTCTGGTACGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAAAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACCGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCCCAATCAGAAGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACTCCTTGCATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTACTGATATACAGGATGCGAAGATCCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGAAGGAGATACTAGTTTGCGTAAAAGTGAAAATTCTGGGGGAAGGACAAATGATGCTTCAGGACAACAACCAGTGTTAACCATAGAGAAGAAAGGGGCTCGGAACATTGGGTCTAAAAACAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCACCACCAAGTGCAAATCCCACCATTGTCACTATTGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGAGTTGTCCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAACAAGACAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCTATTCAGGAACTTGAGCCTTCTGGTTTGGATGCGCTAGCCAGTGCTGCTGTTCTGGGTGATAGTACGGCTGACTTGCAGGAATCAGGTACGACAACCAGGCATCCTCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAGGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTGCGCAAGAAGAAACGCCAATCAGAACGTGAAGTGGAAACTCTGCTCAAGGATAGGAATCCACAGTTCGATGAAACAGGAACGGGTGGGACACTGAGGGGTACGTCTCTGCAAACAAACTATTTAGAGAATGAAGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTGCAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGTGAGGACATGGAACTGGAGGGAGCAGGATTAAGCATGATGAGTCTTGTGGAGGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATTGGCATCTCCAGTGTCACGAATGAGCAACAGTCCAGTCAACCAAGTAGCGTGGAGAGTGAGAGACGCCTGTCTGAGGAATCCGGCCGAGGATCTCTTTCTATCTTGTCCGAGTGTTCTGAGAAGATTCCTAAGCTCAGGAAGGCAAGACTGGAGCTTGAAGCACTGTACGAGGGGGTGCCAGACGATTCGGTTAATCTCACTTTTCGACATCTCACGGATGTCAATCTTCAACCCAACTCCTCTTTTGAAAAGAGAAGAGGCACCCCATCAATTCCAATTCCAATCCCAAGAGATAATGAGACTACCCCATTAAACAAACTCCCCAGCCTAGACTTCAACAGAGCTCTGCAAGCAGCCAACCAACAGTCCCGCCCCGATACCAAAATCAGCCTTCACCCGAGTGCGCAGGTAGGTGGAAGTGGAAGTGCCGGCGACATTCAAAGCCATGCGAAGTCGGAGCATGTGGGTGGGTTAAGGCCGGCTTTGGAGTACACTGCGGCCTACGAGGAGGCAAGCCGCATCAGCGGTATGAGTTCCATGTATCAGCACCACAGGGCCACGGCCGGGACCGGGAGACGCCGCCCGGGGATTCCTCACTCCAATATATGCGCCAACTGCACCACCTACATCTATATCTTCCGACATCGTTGCCTGGTCTGTGGAAGAGTTTACTGCCGGCAATGCGTAAGAATAGGGATGGGGGAGATGACGGAGGGAAGAAAGTGTATGGAGTGTTTGGGAAGAAAATTCAGCCACAGATACATAGGGAAGGCAGGAGATGTGGGTTGCTTCGGCTGGAGGTACTCAACTGCGGTGAAGCAGGCGGAGCTCAAGTGGGCGGAGAAAGGGCCTCGCCGGAAAGGAGAGAGAAGGTACGGCGGTGGCGTAACCAACTCCATAAGCATGATGTCGGCAAGTCAGAGCCCATGGGCACCCACCACCTCCAGCGTGGATGTTTCCACCATTTACAGCTCTCGTTTCGCCGTCATGTCGTCCCCGTCCCTGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCCTTTTAG 3522 47.64 MAASNRCMNTSCRAAIPHDWTKGWPLGSAGYAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCVRRSRLGVIRRDEISNGFDAVTVGTVGFLPPTSVEDQVVRNGINEEKLLQLCNIMEANEPNHFQQSQRVDRSASPAQNRGENLRSPFGEVRSSFLNMNKLPVKCQPSVGSLTYSKLDTSRPHLELKDMKESLSQPSLNITLGVPLGTPNFVVPFSGSAAEEDEKSILPFQQGQRSRPIFPKLIKTGTAVNSEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDAKIPTLSNGSHSGDASFSGVFQNLPLRAEGDTSLRKSENSGGRTNDASGQQPVLTIEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIVTIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCPDNVWDLSRCTCSAPEEISTKEQDNLLRASKDFKKRKIMKSQKSIQELEPSGLDALASAAVLGDSTADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDRNPQFDETGTGGTLRGTSLQTNYLENEGSQSRIKDEEAANSSGQIDLNCHPDREDMELEGAGLSMMSLVEAASQPLDSYSKQIGISSVTNEQQSSQPSSVESERRLSEESGRGSLSILSECSEKIPKLRKARLELEALYEGVPDDSVNLTFRHLTDVNLQPNSSFEKRRGTPSIPIPIPRDNETTPLNKLPSLDFNRALQAANQQSRPDTKISLHPSAQVGGSGSAGDIQSHAKSEHVGGLRPALEYTAAYEEASRISGMSSMYQHHRATAGTGRRRPGIPHSNICANCTTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCMECLGRKFSHRYIGKAGDVGCFGWRYSTAVKQAELKWAEKGPRRKGERRYGGGVTNSISMMSASQSPWAPTTSSVDVSTIYSSRFAVMSSPSLSPHSPAHRHHLPF 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 105343 116167 + CcPI632755_03g000080.1 Cco03g0008 173367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0008 1173 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270(InterPro)
Cco03g0008 1173 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270(InterPro)
Cco03g0008 1173 CDD B3_DNA 334 435 IPR003340 GO:0003677(InterPro)
Cco03g0008 1173 MobiDBLite consensus disorder prediction 748 770 - -
Cco03g0008 1173 SMART B3_2 336 436 IPR003340 GO:0003677(InterPro)
Cco03g0008 1173 MobiDBLite consensus disorder prediction 904 930 - -
Cco03g0008 1173 MobiDBLite consensus disorder prediction 481 496 - -
Cco03g0008 1173 MobiDBLite consensus disorder prediction 731 792 - -
Cco03g0008 1173 MobiDBLite consensus disorder prediction 475 496 - -
Cco03g0008 1173 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677(InterPro)
Cco03g0008 1173 SUPERFAMILY DNA-binding pseudobarrel domain 333 437 IPR015300 -
Cco03g0008 1173 Gene3D - 314 441 IPR015300 -
Cco03g0008 1173 MobiDBLite consensus disorder prediction 943 972 - -
Cco03g0008 1173 MobiDBLite consensus disorder prediction 154 173 - -
Cco03g0008 1173 MobiDBLite consensus disorder prediction 829 855 - -
Cco03g0008 1173 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Cco03g0008 1173 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677(InterPro)
Cco03g0008 1173 MobiDBLite consensus disorder prediction 829 843 - -
Cco03g0008 1173 Gene3D - 571 623 - -
Cco03g0008 1173 MobiDBLite consensus disorder prediction 154 177 - -
Cco03g0008 1173 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 844 - -
Cco03g0008 1173 MobiDBLite consensus disorder prediction 943 979 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0008 Cco-Chr3:105343 Cco10g2263 Cco-Chr10:35493958 2.80E-215 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58877 PF02362 B3 5.30E-16 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0008 K09287 - csv:101214226 1432.54