Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0014 ATGGCCTCCTCTTCCGGGAGCTTAGACACCTCTGCTAATTCTCATCCCTCTTTCACTTTCTCTACTCATCCTTTTATGACTTCTTCTTACTCTGACCTTCTAGCCTCCGGCAACAACCATCCTCCTTCCTCCGCCGCACCCCACGCCGTTCTCCGGGGTTCCGGCACCGGAGTTCCTAAATTCAAATCCCTCCCTCCTCCTTCTCTCCCTCTCTCTCCTCCTCCCCTCTCTCCTTCTTCCTTTTTCGCTATTCCTCCTGGCTTGAGTCCCGCCGAGCTTCTTGATTCCCCTGTTCTTCTCAGTGCTTCTCATGTTTTGCCGTCGCCGACCACTGGGAGTTTCCCGTCTCAGTCGTTGAATTGGAAGAGCAATTCTGGGTATAATCAACAGAGCATTAAGGAAGAAAACAAATATCTGTCTAATTTCTCATTTCAAACTCAATCGTCAAAGCTGCCGCCGACGTCTTTTCAGCCTTCATCCACCACAGCTCCCACGACTCAGGGATGGATTTTTCAAGAACAGCGCAAGAAAGAGGATGGTTTATCGTCGGAGAAGAATATGGTGAAGCCGGAGTTCGGATCGATGCGGAGCTTCTCACCGGAATACGGGGTTGTTCAAAACCAAAACCAAACCAATGGCAGCGGGGAGTTGCAGTCTGATTACGGCAACAATTACCCTCAACAATCTCAGACGGTGAATCGAAGATCGGACGACGGCTACAACTGGAGAAAATACGGCCAAAAACAGGTTAAAGGAAGTGAAAATCCGAGAAGCTATTACAAGTGCACTTTCCCCAATTGCCCAACAAAGAAAAAGGTCGAAAGATCCTTAGATGGACAGATCACGGAGATCGTTTACAAAGGCAGCCATAACCATCCAAAGCCCCAATCCACAAGGAGGTCGTCGCTGTCGTCGGCCGGTTCTTCCCACACCATGGTGGCTTCGAATCAGGCCACCAGCGAGATGGCGGACCAGTCATTTACAACCCAAGGCAGCGGCCAATTTGATGGCGTTGCAACGCCGGAGAATTCCTCGATTTCAATTGGCGACGACGACTTCGATCGGAGCTCTCAAAAGAGCAAATCCGGAGGGGACGATTTTGATGAGGACGAACCAGAGGCTAAGAGATGGCGAAGAGAAGGTGACAACAATGAAGGTATTTCGGCGGTCGGTAGCCGGACGGTGAGAGAGCCGAGAGTCGTCGTCCAAACCACCAGCGACATCGACATTCTCGACGATGGTTACCGGTGGAGGAAGTATGGTCAGAAAGTTGTGAAGGGAAACCCAAATCCAAGGAGTTACTACAAATGCACAAATCCAGGATGTCCAGTAAGAAAGCATGTGGAGAGAGCTTCACATGATCTAAGAGCAGTGATCACAACTTATGAAGGGAAGCACAACCACGATGTTCCACCGGCACGTGGGAGTGGAGGCCATTCCCTCAGCCGTCCATTCCCCAACAACGAAGCTCCGGCAACTGCGATCCGGACATCGGCGTTGACCCATCAGTCAAACAACGGGGGGCATCTGCAGGGTCTGAGGCTGCAGCAATCTTCAGATTCCCAAGCAGCATTCACAGTGGAAATGGTGCAAAATGGGAATGGATTTTCATTCCCAGAATTTGGAAACTCAATGGGAATGGGAATGGGAATGGGTTCCTACATCAACCAAACACAGCCCAATGATAATTTGTTCACCAGAGCCAAAGAAGAGCCAAGAGATCATGACATGTTCATCCAATCTCTCCTATGTTAG 1755 50.14 MASSSGSLDTSANSHPSFTFSTHPFMTSSYSDLLASGNNHPPSSAAPHAVLRGSGTGVPKFKSLPPPSLPLSPPPLSPSSFFAIPPGLSPAELLDSPVLLSASHVLPSPTTGSFPSQSLNWKSNSGYNQQSIKEENKYLSNFSFQTQSSKLPPTSFQPSSTTAPTTQGWIFQEQRKKEDGLSSEKNMVKPEFGSMRSFSPEYGVVQNQNQTNGSGELQSDYGNNYPQQSQTVNRRSDDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLDGQITEIVYKGSHNHPKPQSTRRSSLSSAGSSHTMVASNQATSEMADQSFTTQGSGQFDGVATPENSSISIGDDDFDRSSQKSKSGGDDFDEDEPEAKRWRREGDNNEGISAVGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHDVPPARGSGGHSLSRPFPNNEAPATAIRTSALTHQSNNGGHLQGLRLQQSSDSQAAFTVEMVQNGNGFSFPEFGNSMGMGMGMGSYINQTQPNDNLFTRAKEEPRDHDMFIQSLLC 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 167468 169777 - CcPI632755_03g000140.1 Cco03g0014 173373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0014 584 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 161 486 IPR044810 GO:0003700(InterPro)
Cco03g0014 584 FunFam WRKY transcription factor 227 296 - -
Cco03g0014 584 MobiDBLite consensus disorder prediction 149 171 - -
Cco03g0014 584 SUPERFAMILY WRKY DNA-binding domain 235 295 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 MobiDBLite consensus disorder prediction 200 236 - -
Cco03g0014 584 ProSiteProfiles WRKY domain profile. 237 295 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 MobiDBLite consensus disorder prediction 286 392 - -
Cco03g0014 584 Gene3D WRKY domain 398 464 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 MobiDBLite consensus disorder prediction 149 241 - -
Cco03g0014 584 FunFam WRKY transcription factor 33 398 464 - -
Cco03g0014 584 Pfam WRKY DNA -binding domain 237 293 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 Pfam WRKY DNA -binding domain 412 469 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 SMART WRKY_cls 236 294 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 SMART WRKY_cls 411 470 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 SUPERFAMILY WRKY DNA-binding domain 403 471 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 ProSiteProfiles WRKY domain profile. 406 471 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 MobiDBLite consensus disorder prediction 31 76 - -
Cco03g0014 584 MobiDBLite consensus disorder prediction 348 383 - -
Cco03g0014 584 Gene3D WRKY domain 223 296 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco03g0014 584 MobiDBLite consensus disorder prediction 463 490 - -
Cco03g0014 584 MobiDBLite consensus disorder prediction 291 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2053 Cco-Chr2:33476042 Cco03g0014 Cco-Chr3:167468 4.20E-79 dispersed
Cco03g0014 Cco-Chr3:167468 Cco10g2236 Cco-Chr10:35317552 2.00E-89 dispersed
Cco03g0014 Cco-Chr3:167468 Cco05g2663 Cco-Chr5:34686077 4.40E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58878 PF03106 WRKY 3.60E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0014 K13424 - csv:101207158 1034.25