Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0025 | ATGAATACCTCTACTCTCCTCGCTTCTCATTTCTCAAACAACCGCTGCCCTTTGCTCAATCCTCTCCCTCTTCGAACGTCCACAAACTTCAATCTCACCAAACGACGCCACTTCATAGTCTCAATTCCGCGTGCCTCCTCGGAGGCCACAGAACAACCTGTCTCCTCCTCGTCGCCTTCCGGGCTAGATATCTTTGGTGGCAAGAAGGAGCTCACTGGGATTCAGCCTATTGTTCAGCTAATACCTCCGCCTTTACGGTTAGCAACCTCCGCCATTGTTGTCGCCGGAGCTGTAGCCGCCGGTTATGGCCTGGGGCTTCGCTTTGGTAAGTCCCGGAACGCAGCTTTGGGTGGGGCTGCTGCTCTCGCTGCTGCTAGTGGAGCTGCCGTATACTCCTTGAATTCATGTGTTCCTGAAGTTGCGGCTGTCGATTTGCATAATTATGTTGCCGGATTTGATGATCCTAAGAATGTGAAGAAGGAGGAAATAGAAAGCATTGCCACAAAATATGGAGTTAGCAAGCAAGATGAGGCGTTTAACGCGGAGCTTTGTGACTTGTATTGTCGATTTGTGTCTTCTGTTCTTCCACCGGGAAGTCAAGATCTCAATGGTGATGAGGTTGACACAATCATCAAGTTCAAAAATGCCTTGGGCATTGATGACCCCGATGCAGCTGGTATGCATATGGAAATTGGTAGAAGAATTTTTAGGCAACGGCTTGAAACTGGAGATCGTGATGGTGACATAGAGGAACGTCGGGCATTTCAGAAACTTATATACGTATCAACCCTTGTGTTTGGAGACGCATCATCTTTCCTGTTACCTTGGAAACGTGTTTTTAAAGTTACTGATTCTCAGGTTGAGATTTCCATTCGTGACAACGCTCAACGCCTGTATATTTCTGAGCTAAAATCAGTTGGAAGAGATGTTAATGCGGGAAAGCTCATAAGCCTCAAAGATGCACAACGTTTGTATCGACTTTCTGATGAGCTGGCAGATGAGTTGTTTCAGGAGCATACAAGGAAGCTGGTTGAGGAAAATATATCAGTAGCACTCAATATACTCAAGTCCAGAATAAAGGCAGCCCGGGGAGTCATAGAAGTTGTGGAAGAGCTTGATAAGATACTTGAGTTCAACAGTTTGCTCATTTCATTAAAGAACCATGCAGATGCTAATCGCTTTGCTCCCGGGGTTGGCCCAGTTTCTCTCCTGGGTGGAGAGTATGATGGTGACCGAAAGATGGATGATTTGAAGCTCCTCTATCGAGCCTATGTTACAGATTCTTTATCTAGTGGCCGCATGGAAGAAGATAAGCTCGCTGCCTTGAATCAGCTGAGAAATATATTTGGTTTAGGGAAGCGAGAAGCAGAAAACATTATCCTTGACGTTACCTCAAAGGTTTATCGCAAACGCCTTGCACAGTCTGTAAGTGGTGGTGATTTGGAAATAGCAGATAGTAAAGCTGCCTTCCTCCAAAATCTCTGTGAGGAGCTTCACTTTGATCCATTGAAGGCCAGTGAGATTCATGAAGAGATTTATCGACAAAAGCTTCAGCAATGCGTTGCTGATGGAGAGCTGAGTGATGAGGATGTATCGGCGCTACTGAGGCTAAGAGTTATGCTTTGCATACCTCAACAGACTGTCGAAGCGGCACATACAGATATTTGTGGTTCCTTGTTTGAAAAGGTTGTAAAGGAGGCAATTGCTGCAGGTGTTGATGGTTATGATGCAGATATAAAGAAATCTGTGAGGAAGGCAGCCCACAGCTTGCGCTTGACAAGGGAGGCTGCCATGTCGATTGCAAGCAAAGCAGTTCGGAAGATTTTCATCAACTATATAAAGCGAGCTCGTGGAGCTGGAAATCGTACTGAAGCTGCAAAAGAACTTAAGAAGATGATAGCTTTTAATACGCTAGTTGTTACAGAATTGGTGGCTGATATAAAAGGAGAATCTGCTGATGCTGATGCCTCATCGGAAGAGCCTATCAAAGAAGAAGAGGAACAGCTTGAGGAGGATGAGGAATGGGAACTTCAGAGTTTGAAGAAAATAAGACCAAATGAAGAGCTTTCGGCAAAATGGGGGAAACCTGGTCAGACAGAGATAACTTTGAAGGATGACCTGCCAGAAAGAGAACGAACCGACCTTTACAAGACATATTTACTTTTTTGTTTAACTGGTGAAGTTACCCGAATTCCATTTGGTGCTCAAATTACGACAAAGAAGGATGATTCCGAGTACCTCTTACTAAATCAGCTTGGTAACATTTTGGGTTTAACCACTAAGGAGATTGTTGAAGTACATAGGAGCCTAGCTGAGCAGGCCTTTCAGCAACAGGCTGAGGTAATTTTGGCCGATGGTCAACTTACAAAGGCCAGGGTAGAACAGCTCAATGAGTTGCAGGAGCAAGTTGGGTTGCCTTCTGAATATGCCAATAAGATCATTAAGAGCATAACAACCACAAAAATGGCTGCTGCCATTGAAACTGCTGTCGGTCAAGGGCGGCTCAACATTAAGCAGATTAGAGAACTTAAGGAAGCAAAGGTTGATTTAGATAGCATGATATCTGAGAGATTGCGAGAGAATCTCTTCAAAAAGACCGTGGACGACATTTTCTCATCCGGCACTGGCGAGTTTGATGAAGAAGAGGTCTATGAGAAAATCCCATTGGACCTCAACATTAATGCTGAGAAGGCAAAAGCGGTTGTACACGAGCTGGCAGAAACCAGGTTGTCAAACTCGTTAATTCAGGCCGTAGCTCTGTTGAGGCAGAGGAACCGTCAGGGGGTGGTATCATCTCTCAATGATCTTCTCGCATGTGACAAAGCCGTTCCATCGAAACCTTTATCATGGGACGTGTCTGAAGAACTCGCCGATTTGTACTCTGTATACGCGAATAGTGAGCCGACGCCTGAGAAGTTGTCTCGTTTGCAATATTTGCTGGGCATAGATGACTCTACTGCAGCTGCTATTCGAGAGATGGGAGATAGATTACAACCTATTGTCCCGGTAGATTTAGTCATACGACTCATATCTACGAGCCACAGTTTATCCGCTACCTACTATAAGAGTTCATGTCCAAAGTTACTCTCCATTGTCCGACGTGAAGTCGTGAAAGCAGTGGACAAAGAGTACAGAATGGGAGCATCGTTGCTTCGTCTCCATTTTCACGACTGTTTTGGATGTGATGCGTCGGTGCTATTGGACGACACGTCAAACTTCACTGGAGAAAAGACGGCAATTCCAAACAAAGATTCGTTGAGAGGTTTTGAAGTGATTGACTCAATTAAAACGCTAGTGGAAGCTGCTTGTCCTTCTGTGGTTTCTTGTGCTGATATTTTGTCCCTTGCAGCCCGAGACTCGGTGGTTACTCTTGGGGGACCTTCGTGGGTAGTTGGGCTTGGGCGGAGGGACTCGACCACAGCCAGCTTCGACAGCGCAAACAATGATCTTCCTTCTCCCTTCCTCGACCTTCCCGATCTCATCTCTGCCTTTTCCAACAAAGGCTTCGACACCAAAGAATTGGTCGCCCTTTCAGGATCTCACACGATCGGACAAGCCAGGTGCTCCATGTTCAGAGTAAGAGCCCATAACGAAACCACCACCATTGATTCAGAGTTTGCAGCCTCTCTAAGATCCAATTGCCCTTTCTCCGGCGACGACCAAAGTCTTTCTCCTTTGGATCTCAAAACCCAATCCTTATTCGACAATGCTTATTTCAAGAATTTGGTCCAAAACAAAGGCCTTCTTCATTCCGACCAAGCCCTCTTCAGCAACTCCTCCGCCGATTCTCATGTCACTTCCTATGTCTCCGACTCTTCTGCTTTCTTCTCCGACTTCGCCGCCGCCATGGTTAAGATGTCCAACCTCTCCCCACTCACCGGCTCCGACGGCCAGATTCGTTCCGACTGCCGCAAAATTAACTAA | 3924 | 46.0 | MNTSTLLASHFSNNRCPLLNPLPLRTSTNFNLTKRRHFIVSIPRASSEATEQPVSSSSPSGLDIFGGKKELTGIQPIVQLIPPPLRLATSAIVVAGAVAAGYGLGLRFGKSRNAALGGAAALAAASGAAVYSLNSCVPEVAAVDLHNYVAGFDDPKNVKKEEIESIATKYGVSKQDEAFNAELCDLYCRFVSSVLPPGSQDLNGDEVDTIIKFKNALGIDDPDAAGMHMEIGRRIFRQRLETGDRDGDIEERRAFQKLIYVSTLVFGDASSFLLPWKRVFKVTDSQVEISIRDNAQRLYISELKSVGRDVNAGKLISLKDAQRLYRLSDELADELFQEHTRKLVEENISVALNILKSRIKAARGVIEVVEELDKILEFNSLLISLKNHADANRFAPGVGPVSLLGGEYDGDRKMDDLKLLYRAYVTDSLSSGRMEEDKLAALNQLRNIFGLGKREAENIILDVTSKVYRKRLAQSVSGGDLEIADSKAAFLQNLCEELHFDPLKASEIHEEIYRQKLQQCVADGELSDEDVSALLRLRVMLCIPQQTVEAAHTDICGSLFEKVVKEAIAAGVDGYDADIKKSVRKAAHSLRLTREAAMSIASKAVRKIFINYIKRARGAGNRTEAAKELKKMIAFNTLVVTELVADIKGESADADASSEEPIKEEEEQLEEDEEWELQSLKKIRPNEELSAKWGKPGQTEITLKDDLPERERTDLYKTYLLFCLTGEVTRIPFGAQITTKKDDSEYLLLNQLGNILGLTTKEIVEVHRSLAEQAFQQQAEVILADGQLTKARVEQLNELQEQVGLPSEYANKIIKSITTTKMAAAIETAVGQGRLNIKQIRELKEAKVDLDSMISERLRENLFKKTVDDIFSSGTGEFDEEEVYEKIPLDLNINAEKAKAVVHELAETRLSNSLIQAVALLRQRNRQGVVSSLNDLLACDKAVPSKPLSWDVSEELADLYSVYANSEPTPEKLSRLQYLLGIDDSTAAAIREMGDRLQPIVPVDLVIRLISTSHSLSATYYKSSCPKLLSIVRREVVKAVDKEYRMGASLLRLHFHDCFGCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDSIKTLVEAACPSVVSCADILSLAARDSVVTLGGPSWVVGLGRRDSTTASFDSANNDLPSPFLDLPDLISAFSNKGFDTKELVALSGSHTIGQARCSMFRVRAHNETTTIDSEFAASLRSNCPFSGDDQSLSPLDLKTQSLFDNAYFKNLVQNKGLLHSDQALFSNSSADSHVTSYVSDSSAFFSDFAAAMVKMSNLSPLTGSDGQIRSDCRKIN | 1307 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 278377 | 292767 | + | CcPI632755_03g000250.1 | Cco03g0025 | 173384 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0025 | 1307 | SUPERFAMILY | Heme-dependent peroxidases | 1016 | 1307 | IPR010255 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | FunFam | Peroxidase | 1151 | 1286 | - | - | |
| Cco03g0025 | 1307 | ProSitePatterns | Peroxidases proximal heme-ligand signature. | 1173 | 1183 | IPR019793 | - | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1281 | 1294 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1241 | 1258 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1225 | 1240 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1106 | 1116 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1049 | 1069 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1125 | 1140 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1025 | 1044 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1172 | 1184 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Plant peroxidase signature | 1087 | 1100 | IPR000823 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Haem peroxidase superfamily signature | 1047 | 1061 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Haem peroxidase superfamily signature | 1173 | 1188 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Haem peroxidase superfamily signature | 1227 | 1242 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Haem peroxidase superfamily signature | 1125 | 1137 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | PRINTS | Haem peroxidase superfamily signature | 1107 | 1124 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | CDD | secretory_peroxidase | 1016 | 1306 | IPR033905 | GO:0004601(InterPro)|GO:0042744(InterPro) | |
| Cco03g0025 | 1307 | Coils | Coil | 663 | 683 | - | - | |
| Cco03g0025 | 1307 | PANTHER | PROTEIN TIC110, CHLOROPLASTIC | 8 | 998 | IPR031610 | GO:0045037(PANTHER)|GO:0061927(PANTHER) | |
| Cco03g0025 | 1307 | ProSitePatterns | Peroxidases active site signature. | 1047 | 1058 | IPR019794 | GO:0004601(InterPro) | |
| Cco03g0025 | 1307 | Pfam | Peroxidase | 1032 | 1270 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | Gene3D | - | 1019 | 1307 | - | - | |
| Cco03g0025 | 1307 | ProSiteProfiles | Plant heme peroxidase family profile. | 1015 | 1307 | IPR002016 | GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro) | |
| Cco03g0025 | 1307 | FunFam | Peroxidase | 1019 | 1155 | - | - | |
| Cco03g0025 | 1307 | Pfam | Chloroplast envelope transporter | 71 | 644 | IPR031610 | - | |
| Cco03g0025 | 1307 | Gene3D | Peroxidase, domain 2 | 1151 | 1286 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0025 | Cco-Chr3:278377 | Cco11g0108 | Cco-Chr11:1159819 | 6.50E-88 | dispersed | |
| Cco08g1504 | Cco-Chr8:26789672 | Cco03g0025 | Cco-Chr3:278377 | 2.00E-17 | dispersed | |
| Cco11g0594 | Cco-Chr11:6349590 | Cco03g0025 | Cco-Chr3:278377 | 1.00E-95 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0025 | - | - | - | 0.0 |