Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0025 ATGAATACCTCTACTCTCCTCGCTTCTCATTTCTCAAACAACCGCTGCCCTTTGCTCAATCCTCTCCCTCTTCGAACGTCCACAAACTTCAATCTCACCAAACGACGCCACTTCATAGTCTCAATTCCGCGTGCCTCCTCGGAGGCCACAGAACAACCTGTCTCCTCCTCGTCGCCTTCCGGGCTAGATATCTTTGGTGGCAAGAAGGAGCTCACTGGGATTCAGCCTATTGTTCAGCTAATACCTCCGCCTTTACGGTTAGCAACCTCCGCCATTGTTGTCGCCGGAGCTGTAGCCGCCGGTTATGGCCTGGGGCTTCGCTTTGGTAAGTCCCGGAACGCAGCTTTGGGTGGGGCTGCTGCTCTCGCTGCTGCTAGTGGAGCTGCCGTATACTCCTTGAATTCATGTGTTCCTGAAGTTGCGGCTGTCGATTTGCATAATTATGTTGCCGGATTTGATGATCCTAAGAATGTGAAGAAGGAGGAAATAGAAAGCATTGCCACAAAATATGGAGTTAGCAAGCAAGATGAGGCGTTTAACGCGGAGCTTTGTGACTTGTATTGTCGATTTGTGTCTTCTGTTCTTCCACCGGGAAGTCAAGATCTCAATGGTGATGAGGTTGACACAATCATCAAGTTCAAAAATGCCTTGGGCATTGATGACCCCGATGCAGCTGGTATGCATATGGAAATTGGTAGAAGAATTTTTAGGCAACGGCTTGAAACTGGAGATCGTGATGGTGACATAGAGGAACGTCGGGCATTTCAGAAACTTATATACGTATCAACCCTTGTGTTTGGAGACGCATCATCTTTCCTGTTACCTTGGAAACGTGTTTTTAAAGTTACTGATTCTCAGGTTGAGATTTCCATTCGTGACAACGCTCAACGCCTGTATATTTCTGAGCTAAAATCAGTTGGAAGAGATGTTAATGCGGGAAAGCTCATAAGCCTCAAAGATGCACAACGTTTGTATCGACTTTCTGATGAGCTGGCAGATGAGTTGTTTCAGGAGCATACAAGGAAGCTGGTTGAGGAAAATATATCAGTAGCACTCAATATACTCAAGTCCAGAATAAAGGCAGCCCGGGGAGTCATAGAAGTTGTGGAAGAGCTTGATAAGATACTTGAGTTCAACAGTTTGCTCATTTCATTAAAGAACCATGCAGATGCTAATCGCTTTGCTCCCGGGGTTGGCCCAGTTTCTCTCCTGGGTGGAGAGTATGATGGTGACCGAAAGATGGATGATTTGAAGCTCCTCTATCGAGCCTATGTTACAGATTCTTTATCTAGTGGCCGCATGGAAGAAGATAAGCTCGCTGCCTTGAATCAGCTGAGAAATATATTTGGTTTAGGGAAGCGAGAAGCAGAAAACATTATCCTTGACGTTACCTCAAAGGTTTATCGCAAACGCCTTGCACAGTCTGTAAGTGGTGGTGATTTGGAAATAGCAGATAGTAAAGCTGCCTTCCTCCAAAATCTCTGTGAGGAGCTTCACTTTGATCCATTGAAGGCCAGTGAGATTCATGAAGAGATTTATCGACAAAAGCTTCAGCAATGCGTTGCTGATGGAGAGCTGAGTGATGAGGATGTATCGGCGCTACTGAGGCTAAGAGTTATGCTTTGCATACCTCAACAGACTGTCGAAGCGGCACATACAGATATTTGTGGTTCCTTGTTTGAAAAGGTTGTAAAGGAGGCAATTGCTGCAGGTGTTGATGGTTATGATGCAGATATAAAGAAATCTGTGAGGAAGGCAGCCCACAGCTTGCGCTTGACAAGGGAGGCTGCCATGTCGATTGCAAGCAAAGCAGTTCGGAAGATTTTCATCAACTATATAAAGCGAGCTCGTGGAGCTGGAAATCGTACTGAAGCTGCAAAAGAACTTAAGAAGATGATAGCTTTTAATACGCTAGTTGTTACAGAATTGGTGGCTGATATAAAAGGAGAATCTGCTGATGCTGATGCCTCATCGGAAGAGCCTATCAAAGAAGAAGAGGAACAGCTTGAGGAGGATGAGGAATGGGAACTTCAGAGTTTGAAGAAAATAAGACCAAATGAAGAGCTTTCGGCAAAATGGGGGAAACCTGGTCAGACAGAGATAACTTTGAAGGATGACCTGCCAGAAAGAGAACGAACCGACCTTTACAAGACATATTTACTTTTTTGTTTAACTGGTGAAGTTACCCGAATTCCATTTGGTGCTCAAATTACGACAAAGAAGGATGATTCCGAGTACCTCTTACTAAATCAGCTTGGTAACATTTTGGGTTTAACCACTAAGGAGATTGTTGAAGTACATAGGAGCCTAGCTGAGCAGGCCTTTCAGCAACAGGCTGAGGTAATTTTGGCCGATGGTCAACTTACAAAGGCCAGGGTAGAACAGCTCAATGAGTTGCAGGAGCAAGTTGGGTTGCCTTCTGAATATGCCAATAAGATCATTAAGAGCATAACAACCACAAAAATGGCTGCTGCCATTGAAACTGCTGTCGGTCAAGGGCGGCTCAACATTAAGCAGATTAGAGAACTTAAGGAAGCAAAGGTTGATTTAGATAGCATGATATCTGAGAGATTGCGAGAGAATCTCTTCAAAAAGACCGTGGACGACATTTTCTCATCCGGCACTGGCGAGTTTGATGAAGAAGAGGTCTATGAGAAAATCCCATTGGACCTCAACATTAATGCTGAGAAGGCAAAAGCGGTTGTACACGAGCTGGCAGAAACCAGGTTGTCAAACTCGTTAATTCAGGCCGTAGCTCTGTTGAGGCAGAGGAACCGTCAGGGGGTGGTATCATCTCTCAATGATCTTCTCGCATGTGACAAAGCCGTTCCATCGAAACCTTTATCATGGGACGTGTCTGAAGAACTCGCCGATTTGTACTCTGTATACGCGAATAGTGAGCCGACGCCTGAGAAGTTGTCTCGTTTGCAATATTTGCTGGGCATAGATGACTCTACTGCAGCTGCTATTCGAGAGATGGGAGATAGATTACAACCTATTGTCCCGGTAGATTTAGTCATACGACTCATATCTACGAGCCACAGTTTATCCGCTACCTACTATAAGAGTTCATGTCCAAAGTTACTCTCCATTGTCCGACGTGAAGTCGTGAAAGCAGTGGACAAAGAGTACAGAATGGGAGCATCGTTGCTTCGTCTCCATTTTCACGACTGTTTTGGATGTGATGCGTCGGTGCTATTGGACGACACGTCAAACTTCACTGGAGAAAAGACGGCAATTCCAAACAAAGATTCGTTGAGAGGTTTTGAAGTGATTGACTCAATTAAAACGCTAGTGGAAGCTGCTTGTCCTTCTGTGGTTTCTTGTGCTGATATTTTGTCCCTTGCAGCCCGAGACTCGGTGGTTACTCTTGGGGGACCTTCGTGGGTAGTTGGGCTTGGGCGGAGGGACTCGACCACAGCCAGCTTCGACAGCGCAAACAATGATCTTCCTTCTCCCTTCCTCGACCTTCCCGATCTCATCTCTGCCTTTTCCAACAAAGGCTTCGACACCAAAGAATTGGTCGCCCTTTCAGGATCTCACACGATCGGACAAGCCAGGTGCTCCATGTTCAGAGTAAGAGCCCATAACGAAACCACCACCATTGATTCAGAGTTTGCAGCCTCTCTAAGATCCAATTGCCCTTTCTCCGGCGACGACCAAAGTCTTTCTCCTTTGGATCTCAAAACCCAATCCTTATTCGACAATGCTTATTTCAAGAATTTGGTCCAAAACAAAGGCCTTCTTCATTCCGACCAAGCCCTCTTCAGCAACTCCTCCGCCGATTCTCATGTCACTTCCTATGTCTCCGACTCTTCTGCTTTCTTCTCCGACTTCGCCGCCGCCATGGTTAAGATGTCCAACCTCTCCCCACTCACCGGCTCCGACGGCCAGATTCGTTCCGACTGCCGCAAAATTAACTAA 3924 46.0 MNTSTLLASHFSNNRCPLLNPLPLRTSTNFNLTKRRHFIVSIPRASSEATEQPVSSSSPSGLDIFGGKKELTGIQPIVQLIPPPLRLATSAIVVAGAVAAGYGLGLRFGKSRNAALGGAAALAAASGAAVYSLNSCVPEVAAVDLHNYVAGFDDPKNVKKEEIESIATKYGVSKQDEAFNAELCDLYCRFVSSVLPPGSQDLNGDEVDTIIKFKNALGIDDPDAAGMHMEIGRRIFRQRLETGDRDGDIEERRAFQKLIYVSTLVFGDASSFLLPWKRVFKVTDSQVEISIRDNAQRLYISELKSVGRDVNAGKLISLKDAQRLYRLSDELADELFQEHTRKLVEENISVALNILKSRIKAARGVIEVVEELDKILEFNSLLISLKNHADANRFAPGVGPVSLLGGEYDGDRKMDDLKLLYRAYVTDSLSSGRMEEDKLAALNQLRNIFGLGKREAENIILDVTSKVYRKRLAQSVSGGDLEIADSKAAFLQNLCEELHFDPLKASEIHEEIYRQKLQQCVADGELSDEDVSALLRLRVMLCIPQQTVEAAHTDICGSLFEKVVKEAIAAGVDGYDADIKKSVRKAAHSLRLTREAAMSIASKAVRKIFINYIKRARGAGNRTEAAKELKKMIAFNTLVVTELVADIKGESADADASSEEPIKEEEEQLEEDEEWELQSLKKIRPNEELSAKWGKPGQTEITLKDDLPERERTDLYKTYLLFCLTGEVTRIPFGAQITTKKDDSEYLLLNQLGNILGLTTKEIVEVHRSLAEQAFQQQAEVILADGQLTKARVEQLNELQEQVGLPSEYANKIIKSITTTKMAAAIETAVGQGRLNIKQIRELKEAKVDLDSMISERLRENLFKKTVDDIFSSGTGEFDEEEVYEKIPLDLNINAEKAKAVVHELAETRLSNSLIQAVALLRQRNRQGVVSSLNDLLACDKAVPSKPLSWDVSEELADLYSVYANSEPTPEKLSRLQYLLGIDDSTAAAIREMGDRLQPIVPVDLVIRLISTSHSLSATYYKSSCPKLLSIVRREVVKAVDKEYRMGASLLRLHFHDCFGCDASVLLDDTSNFTGEKTAIPNKDSLRGFEVIDSIKTLVEAACPSVVSCADILSLAARDSVVTLGGPSWVVGLGRRDSTTASFDSANNDLPSPFLDLPDLISAFSNKGFDTKELVALSGSHTIGQARCSMFRVRAHNETTTIDSEFAASLRSNCPFSGDDQSLSPLDLKTQSLFDNAYFKNLVQNKGLLHSDQALFSNSSADSHVTSYVSDSSAFFSDFAAAMVKMSNLSPLTGSDGQIRSDCRKIN 1307
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 278377 292767 + CcPI632755_03g000250.1 Cco03g0025 173384
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0025 1307 SUPERFAMILY Heme-dependent peroxidases 1016 1307 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 FunFam Peroxidase 1151 1286 - -
Cco03g0025 1307 ProSitePatterns Peroxidases proximal heme-ligand signature. 1173 1183 IPR019793 -
Cco03g0025 1307 PRINTS Plant peroxidase signature 1281 1294 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Plant peroxidase signature 1241 1258 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Plant peroxidase signature 1225 1240 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Plant peroxidase signature 1106 1116 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Plant peroxidase signature 1049 1069 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Plant peroxidase signature 1125 1140 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Plant peroxidase signature 1025 1044 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Plant peroxidase signature 1172 1184 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Plant peroxidase signature 1087 1100 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Haem peroxidase superfamily signature 1047 1061 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Haem peroxidase superfamily signature 1173 1188 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Haem peroxidase superfamily signature 1227 1242 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Haem peroxidase superfamily signature 1125 1137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 PRINTS Haem peroxidase superfamily signature 1107 1124 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 CDD secretory_peroxidase 1016 1306 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco03g0025 1307 Coils Coil 663 683 - -
Cco03g0025 1307 PANTHER PROTEIN TIC110, CHLOROPLASTIC 8 998 IPR031610 GO:0045037(PANTHER)|GO:0061927(PANTHER)
Cco03g0025 1307 ProSitePatterns Peroxidases active site signature. 1047 1058 IPR019794 GO:0004601(InterPro)
Cco03g0025 1307 Pfam Peroxidase 1032 1270 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 Gene3D - 1019 1307 - -
Cco03g0025 1307 ProSiteProfiles Plant heme peroxidase family profile. 1015 1307 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco03g0025 1307 FunFam Peroxidase 1019 1155 - -
Cco03g0025 1307 Pfam Chloroplast envelope transporter 71 644 IPR031610 -
Cco03g0025 1307 Gene3D Peroxidase, domain 2 1151 1286 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0025 Cco-Chr3:278377 Cco11g0108 Cco-Chr11:1159819 6.50E-88 dispersed
Cco08g1504 Cco-Chr8:26789672 Cco03g0025 Cco-Chr3:278377 2.00E-17 dispersed
Cco11g0594 Cco-Chr11:6349590 Cco03g0025 Cco-Chr3:278377 1.00E-95 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0025 - - - 0.0