Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0049 ATGGTTGACAACGGCGAGGAGAAGTTGCTGGCTATGGCTCGCCACATAGCCAAGACCATGGGTCGCAACGAGTCCATGGCTGATGATATTCTTCAGATTTTTTCCAATTTTGATGCTAGGTTTTCCCTTGATAAGTTGTCTGATAAACCCGATGAGCTTGACCCCAGAGCCCCCCCCGCTTTGCAACGCTCTCTCAAGTCTTTGGACCGCCGGATCTCCCAATACTTGGCTGCCGACCACCCCATTTGGGCTGACTCCGCCGATTCCTCTGCTTTTCTTGACGCTATCGATGAGTTGATGGTTATCATTAGGGACTGGGCTCCTATGGCTAGGGATAAGTCTGTTACCGCCTACCTTGCTCGCGCCGACGATCTGATGCAGCAGGCCATGTTCCGTGTCGACCAAGAGTTCCGGTCGTTGATGGACCGTGGAGGTGAGTCTTTTGAATTGACTCGCCATTTCAGGAACGGCGAGTCAACGGGGGATTTCTGCTTCGATTCTGAGGAAGATGAGGAAGGAATTCTTGGCGATGGCGATGCTCTCCAGATCCCTGTGGCGCAGCCGGTGACGGACTACAACATCGTTATCGATGCACTTCCGTCGGGGACTATCAGCGATCTTCATGAAATAGCGAAGCGTATGGTAGCGGCTGGGTTCGAGAAAGAGTGTTCACACGCTTACAGTAGCTGCAGGAGGGAGTTTTTGGAGGAGAGTCTTTCTAGGTTGGGGTTACAGAAGCTGAGCATCGATGAAGTTCAAAAGATGCAATGGCATGACCTTGAAGAGGAGATTGAACGCTGGATGAAAGCGATTACCGTCTCCCTTCGAATTCTCTTCCCAAGTGAACGACGCCTCTGCGAACGCGTCTTCGTCGGCCTCTCCTCCACCGCCGATCTTTCTTTCATGGAGGTCTGCCGTGGATCGACTATCCAGCTATTGAATTTTGCAGATGCGGTAGCAATTGGCTCCCGCGCGCCGGAACGACTTTTCAAAATCCTCGATATGTTCGAGACCTTGAGAGACTTGATGCCAGAATTCGATTCAGTATTTTCAGATCAGTACTGCTTATTGCTTAGAAATGAAGCAATTACAATCTGGAAAAGGTTAGGCGGAACAATCAAAGGGATCTTCATGGAGCTTGAGAATTTGATCCGCCGCGATCCGGCTAAAACTCCGGTCCCGGGGGGCGGCCTTCATCCAATCACTCGATATGTGATGAATTACCTTAGAGCAGCTTGTAAATCTCGGCAGACTTTGGAGCAAGTTTTCGAAGAAGCCGCTCTTCCCTCTAAGGATTACACTAAGCTCGAGGACAGAGCAGCAGCATCGTCTTCCTTATCAGTTCAAATGGACTGGATAATGGAGCTTTTAGAGAGCAATTTAGAGGCGAAATCGAAGATATACAAGGATCTTTCCTTAAGCTCTGTGTTTCTGATGAACAATGGGCGATACATTGTTCAGAAAGTGAAAGACAGTGAATTAGGGTCAGTTTTAGGCGAGGACTGGATTCGAAAACACTCGGTTAAAAACCGGCAATACCTCGGAAACTACCTGAAAAGCTCATGGAGCAAGGTGGTCGGAGCATTGAAAATGGACAGTGGTACTATAGCTCCGGCTGTGATGAAGGAGAAGCTCCAATCATTCAATATGCAATTTGAAGAAATCTGCCAAACCCAATCCACATGGGTGATATTTGAGCATCAACTTAGAGAAGAAGCAAGAATCTCAGTTGCCAAAATTCTGTTGCCAGCATATCAAAAGTTCATCGGCAGGTACCAGAGTTTGCCGGAGTTGGCAAAGCGTACAGACCGGTATTTGAAGTACACGGCTGAGGATATGGAGGCTCGAATCACCGAGCTGTTTGAAGGCGGCGGCGGCTCAGGCAGTGGAAGGAGGTAA 1899 49.03 MVDNGEEKLLAMARHIAKTMGRNESMADDILQIFSNFDARFSLDKLSDKPDELDPRAPPALQRSLKSLDRRISQYLAADHPIWADSADSSAFLDAIDELMVIIRDWAPMARDKSVTAYLARADDLMQQAMFRVDQEFRSLMDRGGESFELTRHFRNGESTGDFCFDSEEDEEGILGDGDALQIPVAQPVTDYNIVIDALPSGTISDLHEIAKRMVAAGFEKECSHAYSSCRREFLEESLSRLGLQKLSIDEVQKMQWHDLEEEIERWMKAITVSLRILFPSERRLCERVFVGLSSTADLSFMEVCRGSTIQLLNFADAVAIGSRAPERLFKILDMFETLRDLMPEFDSVFSDQYCLLLRNEAITIWKRLGGTIKGIFMELENLIRRDPAKTPVPGGGLHPITRYVMNYLRAACKSRQTLEQVFEEAALPSKDYTKLEDRAAASSSLSVQMDWIMELLESNLEAKSKIYKDLSLSSVFLMNNGRYIVQKVKDSELGSVLGEDWIRKHSVKNRQYLGNYLKSSWSKVVGALKMDSGTIAPAVMKEKLQSFNMQFEEICQTQSTWVIFEHQLREEARISVAKILLPAYQKFIGRYQSLPELAKRTDRYLKYTAEDMEARITELFEGGGGSGSGRR 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 441981 443879 + CcPI632755_03g000490.1 Cco03g0049 173408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0049 632 Pfam Exo70 exocyst complex subunit C-terminal 266 618 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cco03g0049 632 Gene3D Exocyst complex component Exo70 82 628 - -
Cco03g0049 632 PANTHER EXOCYST COMPLEX PROTEIN EXO70 63 623 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cco03g0049 632 FunFam Exocyst subunit Exo70 family protein 76 629 - -
Cco03g0049 632 Pfam Exocyst complex component Exo70 N-terminal 86 142 - -
Cco03g0049 632 SUPERFAMILY Cullin repeat-like 83 622 IPR016159 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0049 Cco-Chr3:441981 Cco03g1393 Cco-Chr3:27829460 8.80E-107 dispersed
Cco03g0049 Cco-Chr3:441981 Cco03g0205 Cco-Chr3:2123041 3.60E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0049 K07195 - csv:101204511 1158.67