Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0061 ATGAACAACCCATCACAGGAAAATGTTGAAACAGAAGGCATCTCTCCAAAGAATGTGAAGAATGAGTCCTACAGAAGTGTGCTTATGTTGGCTTACCAAAGTCTAGGAGTTGTTTATGGGGACCTCAGCACCTCCCCTCTCTATGTCTACAAAACCACCTTCTCTGGGAAATTGAGTCTCCATGAGAATGATGAAGAGATTTATGGGGTTCTATCCTTTATCTTCTGGACATTTACACTCATTGCTCTCTTCAAATATGTTTTCATTGTCATGTCAGCCGACGATAACGGTGAAGGGGGTACCTTTGCACTGTACTCTCTTCTCTGTAGGCATGCTAGATTATGCATATTACCGAATCAAGAGCCTGTAGATGAACAGTTATCAGCATATGACATCAAGGGAATCTCGGAGACAAGGCCGAGTGCTGCTCTAAAGTCTTTTTTTCGGCTGCATCCATCTTTTCGAAGAGGTTTTTTGTTGTTTGTTCTCTTCGGAACCTGCATGGCTATTGGTGATGGAGTGCTTACTCCTGCAATATCAGTTCTTTCAGCAGTCTCAGGAGTCAAACATAAGATCACTGGACTCCATGAGAATTACGTTGTTTTAATCTCGTGCGTCATCTTAGTTGGACTATTCTCCCTCCAGCATCGTGGAACACACAAAGTTGCTTTCATGTTTGCTCCAATCATCACGGTGTGGCTTGTCTGTATTAGTGTTATCGGAATGTATAATATTATCAAATGGAACCCAAGTATTTATCACGCACTCTCTCCAGTTTATATGCTGAAATTCCTTCGAAGCACAGGTGTTGAAGGTTGGATTTCATTAGGTGGAATTGTTCTCTCCATAACAGGTGTGGAGGCAATGTTTGCTGATTTAGGCCACTTCTCTTCACTTTCGATCAAGATTGCCTTCACATTTCTTGTATATCCCTCCTTGATACTTGCTTATTTGGGTGAGGCTGCATTTCTCTCTAAGCACCACGAAGATATTCAGAGAAGCTTCTACAAAGCAATACCTGAAGCTGTGTTTTGGCCAGTGTTCGTCGTGGCCACTTTTGCTTCTGTCGTAGGAAGTCAAGCGGTGATTTCGGCTACATTCTCCCTTGTAAACCAGTGCTGTGCTCTAAATTGTTTCCCCCATGTGAAAACTATGCACACTTCGAATCAGATATATGGGCAGATTTATATCCCAGAAGTTAATTGGATGCTAATGTGCCTTTGTTTAGCTGTGACAATTGGCTTGAGAGACACAAACATGATAGGCCATGCATATGGGCTGGCAGTCACCATTGTTATGTTTGTCTCAACTTGCTTGATGACACTTGTGATGATAATTGTTTGGAAGCAGAGGTTGATCAATGCCATAGCATTTTTCATGTTTTTTGGGTCGATCGAACTACTTTACATCTCTGCATCAATTGTCAAAGTTCATGAAGGTGGTTGGATCCCTCTCGTGTTTTCTACTATCTTTATGTGTTCGATGTATGCATGGTTCTATGGGACGATGAAGAAACACGAATACGACGACGAGAACAAAGTGTCGATGAATAGGATACTTTCTTCGGGGCCTAGCCTTGGCATAGTGCATGTGCCCGGAATTGGACTCATATACACTAATCTGGTCACTGGTGTTCCTGCTGTTTTTGGTCACTTTGTAACCACTTTGCCTGCATTTCATCAAGTGCTTGTATTTGTTTGTATAAAATACGTTCAAGTTCCCCATATTGACGAAGAAGATCGTTTGCTCATTTCGAGGGTGGGGCCGAAAGATTGCAACATGTTTCGGTGCATTGTCCGGTATGGTTACAGGGATTTGCTACAAGAAAACTACAATTTCGAGAACAGATTGGTGTTTTCCTTAGTGCATTATGTAGAAACAGAAGATCACTTTTGGAAACCAATGACACAAGTCTCTAGAGGGTGTGAAAATTCAGAAGAACCTTGTGAATATGAACCATTGGAGCAGGCTTTTACAAGCTCAAATATGTTGCAGTCTTCTAACAAATATCAAGCAACGGATACTGCAGTCGACGACTGGGAAAAGTCTACACATAATGAGGAAGCGATGCAGATATTGAGAGCGAAAGAATCAGGAATCACGTACATCTTTGGACATTGCTCAGTCAAGGCCAAGAAATCATCTTCCATTTTCAAGAAGTTAGCCATTGATATTGTGTATGCTTTTTTGAAACAAAATTGTAGAGAGCCTGAGGTTTTACTGAATGTGCCTCACACTTCTCTCTTGGAAGTAGGCATGGTATATTATGTATAG 2274 41.56 MNNPSQENVETEGISPKNVKNESYRSVLMLAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHENDEEIYGVLSFIFWTFTLIALFKYVFIVMSADDNGEGGTFALYSLLCRHARLCILPNQEPVDEQLSAYDIKGISETRPSAALKSFFRLHPSFRRGFLLFVLFGTCMAIGDGVLTPAISVLSAVSGVKHKITGLHENYVVLISCVILVGLFSLQHRGTHKVAFMFAPIITVWLVCISVIGMYNIIKWNPSIYHALSPVYMLKFLRSTGVEGWISLGGIVLSITGVEAMFADLGHFSSLSIKIAFTFLVYPSLILAYLGEAAFLSKHHEDIQRSFYKAIPEAVFWPVFVVATFASVVGSQAVISATFSLVNQCCALNCFPHVKTMHTSNQIYGQIYIPEVNWMLMCLCLAVTIGLRDTNMIGHAYGLAVTIVMFVSTCLMTLVMIIVWKQRLINAIAFFMFFGSIELLYISASIVKVHEGGWIPLVFSTIFMCSMYAWFYGTMKKHEYDDENKVSMNRILSSGPSLGIVHVPGIGLIYTNLVTGVPAVFGHFVTTLPAFHQVLVFVCIKYVQVPHIDEEDRLLISRVGPKDCNMFRCIVRYGYRDLLQENYNFENRLVFSLVHYVETEDHFWKPMTQVSRGCENSEEPCEYEPLEQAFTSSNMLQSSNKYQATDTAVDDWEKSTHNEEAMQILRAKESGITYIFGHCSVKAKKSSSIFKKLAIDIVYAFLKQNCREPEVLLNVPHTSLLEVGMVYYV 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 595701 600266 - CcPI632755_03g000610.1 Cco03g0061 173420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0061 757 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 19 757 IPR003855 GO:0006813(PANTHER)|GO:0015079(PANTHER)|GO:0015079(InterPro)|GO:0016020(PANTHER)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco03g0061 757 NCBIfam potassium uptake protein 30 757 IPR003855 GO:0015079(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cco03g0061 757 Pfam K+ potassium transporter integral membrane domain 30 521 IPR053951 -
Cco03g0061 757 Pfam K+ potassium transporter C-terminal domain 532 755 IPR053952 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0061 Cco-Chr3:595701 Cco05g1438 Cco-Chr5:16234497 6.40E-237 dispersed
Cco03g0061 Cco-Chr3:595701 Cco09g2095 Cco-Chr9:35333752 3.70E-229 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0061 K03549 - csv:101222845 1418.68