Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0064 | ATGGTGAAAGCGGCGGCGCTTTCGTGGACGCGAAGTAAGTGTCTCATCGGAAAGGGCTCCTTTGGAACAGTGAGTGTCGGAATCGGGAAATCGGACGGTCGGATTTTCGCGGTGAAATCTGTGGAGCAGAGTAATGGATTTCGGCGACAAATTGAGTGTTTAGAGAACGAAATTCGGATTCTCCGATCCTTGAATTCGCCTTACGTTGTGGGGTTTCTTGGCGATGATGTTTCTGTTGAGTCTCCCACGACGTCGTTTCGAAATCTGCACATGGAGTATTTGCCAGGTGGCACCGTTGCCGACGATCCCACCGGGGCCGGCGGTGAGAAGCTTTTACGGGAGAGAACATGGTGCCTCGTTTCGGCTATGAGTTACATTCACTCGAAAGGAATTGTCCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCCGGGGTCGTGAAATTGGCTGATTTCGGCTCTGCAATTGAGCTTTCCGGCGCCGACGACAGGTGTCGGGGTTCGGTTGCGCCACGTGGGAGTCCACTGTGGATGGCGCCGGAGGTGGTCCGGGGAGAATTTCAGGGGCCGGAATCGGATGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGCGTGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGATTTTCGGATGATTTGCCGGAGTTTCCAACACGGTTGTCAGACGTCGGCAGGGATTTTCTCCGAAAGTGTCTTAGAAGGAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCCTCGCCGGAGATTGCTGTAGAGAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAGTTTCTCCGACGAAGAGGAGGAAGTTCAGATCGCCAACGAAACCTCCGGCTCCGGTGGGCAGGAAAGTGAGATCTCTGATAAGGAAAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGTTGGTCGCCGGTGAGAAGATGTTGCAGTGAAGCGGCAGCGGAGACGGAGGCGAGCGGTCGGGAAGAAGAAAAAGAAGAGAGAGGGGCAGAATGGGAATATGCAAATTTGAGAGGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTGACAGACAATCACGGAAAATTGGGTGCCGAATATTCAAATCCTGGCGGTAAGAAAATTTCGGAGCGGCCACGTAATAATTACGGCGGCGGTGACGGTGACGGTGACGGTGGCGTTAGCGGTGGATTAAGTTTCCGGCGGTGGGGGTTTGAAGGATGTGCAATTACAACAATAACCTCGTGGATATACTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGATGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTCTGCCTAAAAAAGCTGCCTTAAATTATATAAAAATCTTGAAAATCAATTAA | 1497 | 50.37 | MVKAAALSWTRSKCLIGKGSFGTVSVGIGKSDGRIFAVKSVEQSNGFRRQIECLENEIRILRSLNSPYVVGFLGDDVSVESPTTSFRNLHMEYLPGGTVADDPTGAGGEKLLRERTWCLVSAMSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIELSGADDRCRGSVAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPTRLSDVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAASPEIAVENSPRCVLDWVNGSFSDEEEEVQIANETSGSGGQESEISDKERIGKLSTSEWPNWESDGWSPVRRCCSEAAAETEASGREEEKEERGAEWEYANLRGVEGGMEGTSSEYSEFVTDNHGKLGAEYSNPGGKKISERPRNNYGGGDGDGDGGVSGGLSFRRWGFEGCAITTITSWIYSIELILCYYWKILMKMCYLGITLYYLSFLPKKAALNYIKILKIN | 498 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 626731 | 628227 | - | CcPI632755_03g000640.1 | Cco03g0064 | 173423 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0064 | 498 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 131 | 143 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0064 | 498 | SUPERFAMILY | Protein kinase-like (PK-like) | 14 | 284 | IPR011009 | - | |
Cco03g0064 | 498 | FunFam | Serine threonine protein kinase putative | 7 | 324 | - | - | |
Cco03g0064 | 498 | MobiDBLite | consensus disorder prediction | 350 | 374 | - | - | |
Cco03g0064 | 498 | ProSitePatterns | Protein kinases ATP-binding region signature. | 16 | 39 | IPR017441 | GO:0005524(InterPro) | |
Cco03g0064 | 498 | MobiDBLite | consensus disorder prediction | 303 | 336 | - | - | |
Cco03g0064 | 498 | MobiDBLite | consensus disorder prediction | 401 | 425 | - | - | |
Cco03g0064 | 498 | SMART | serkin_6 | 10 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0064 | 498 | Gene3D | Transferase(Phosphotransferase) domain 1 | 6 | 322 | - | - | |
Cco03g0064 | 498 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 6 | 270 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cco03g0064 | 498 | Pfam | Protein kinase domain | 15 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0064 | 498 | ProSiteProfiles | Protein kinase domain profile. | 10 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0064 | 498 | CDD | STKc_MAPKKK | 8 | 269 | - | - | |
Cco03g0064 | 498 | MobiDBLite | consensus disorder prediction | 353 | 371 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0064 | Cco-Chr3:626731 | Cco04g1964 | Cco-Chr4:33934069 | 1.50E-53 | dispersed | |
Cco03g0064 | Cco-Chr3:626731 | Cco02g0982 | Cco-Chr2:12165047 | 2.50E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86630 | PF00069 | Pkinase | 4.80E-52 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0064 | - | - | - | 0.0 |