Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0064 ATGGTGAAAGCGGCGGCGCTTTCGTGGACGCGAAGTAAGTGTCTCATCGGAAAGGGCTCCTTTGGAACAGTGAGTGTCGGAATCGGGAAATCGGACGGTCGGATTTTCGCGGTGAAATCTGTGGAGCAGAGTAATGGATTTCGGCGACAAATTGAGTGTTTAGAGAACGAAATTCGGATTCTCCGATCCTTGAATTCGCCTTACGTTGTGGGGTTTCTTGGCGATGATGTTTCTGTTGAGTCTCCCACGACGTCGTTTCGAAATCTGCACATGGAGTATTTGCCAGGTGGCACCGTTGCCGACGATCCCACCGGGGCCGGCGGTGAGAAGCTTTTACGGGAGAGAACATGGTGCCTCGTTTCGGCTATGAGTTACATTCACTCGAAAGGAATTGTCCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCCGGGGTCGTGAAATTGGCTGATTTCGGCTCTGCAATTGAGCTTTCCGGCGCCGACGACAGGTGTCGGGGTTCGGTTGCGCCACGTGGGAGTCCACTGTGGATGGCGCCGGAGGTGGTCCGGGGAGAATTTCAGGGGCCGGAATCGGATGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGCGTGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGATTTTCGGATGATTTGCCGGAGTTTCCAACACGGTTGTCAGACGTCGGCAGGGATTTTCTCCGAAAGTGTCTTAGAAGGAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCCTCGCCGGAGATTGCTGTAGAGAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAGTTTCTCCGACGAAGAGGAGGAAGTTCAGATCGCCAACGAAACCTCCGGCTCCGGTGGGCAGGAAAGTGAGATCTCTGATAAGGAAAGAATTGGGAAATTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGTTGGTCGCCGGTGAGAAGATGTTGCAGTGAAGCGGCAGCGGAGACGGAGGCGAGCGGTCGGGAAGAAGAAAAAGAAGAGAGAGGGGCAGAATGGGAATATGCAAATTTGAGAGGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTGACAGACAATCACGGAAAATTGGGTGCCGAATATTCAAATCCTGGCGGTAAGAAAATTTCGGAGCGGCCACGTAATAATTACGGCGGCGGTGACGGTGACGGTGACGGTGGCGTTAGCGGTGGATTAAGTTTCCGGCGGTGGGGGTTTGAAGGATGTGCAATTACAACAATAACCTCGTGGATATACTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGATGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTCTGCCTAAAAAAGCTGCCTTAAATTATATAAAAATCTTGAAAATCAATTAA 1497 50.37 MVKAAALSWTRSKCLIGKGSFGTVSVGIGKSDGRIFAVKSVEQSNGFRRQIECLENEIRILRSLNSPYVVGFLGDDVSVESPTTSFRNLHMEYLPGGTVADDPTGAGGEKLLRERTWCLVSAMSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIELSGADDRCRGSVAPRGSPLWMAPEVVRGEFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPTRLSDVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAASPEIAVENSPRCVLDWVNGSFSDEEEEVQIANETSGSGGQESEISDKERIGKLSTSEWPNWESDGWSPVRRCCSEAAAETEASGREEEKEERGAEWEYANLRGVEGGMEGTSSEYSEFVTDNHGKLGAEYSNPGGKKISERPRNNYGGGDGDGDGGVSGGLSFRRWGFEGCAITTITSWIYSIELILCYYWKILMKMCYLGITLYYLSFLPKKAALNYIKILKIN 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 626731 628227 - CcPI632755_03g000640.1 Cco03g0064 173423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0064 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0064 498 SUPERFAMILY Protein kinase-like (PK-like) 14 284 IPR011009 -
Cco03g0064 498 FunFam Serine threonine protein kinase putative 7 324 - -
Cco03g0064 498 MobiDBLite consensus disorder prediction 350 374 - -
Cco03g0064 498 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524(InterPro)
Cco03g0064 498 MobiDBLite consensus disorder prediction 303 336 - -
Cco03g0064 498 MobiDBLite consensus disorder prediction 401 425 - -
Cco03g0064 498 SMART serkin_6 10 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0064 498 Gene3D Transferase(Phosphotransferase) domain 1 6 322 - -
Cco03g0064 498 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 6 270 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco03g0064 498 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0064 498 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0064 498 CDD STKc_MAPKKK 8 269 - -
Cco03g0064 498 MobiDBLite consensus disorder prediction 353 371 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0064 Cco-Chr3:626731 Cco04g1964 Cco-Chr4:33934069 1.50E-53 dispersed
Cco03g0064 Cco-Chr3:626731 Cco02g0982 Cco-Chr2:12165047 2.50E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86630 PF00069 Pkinase 4.80E-52 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0064 - - - 0.0