Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0065 ATGTCTGTCTCCGTTGCGGTTTCGAATTCGCCGGGATTTTCTCCTTCGTCTATGTTCTGCAACAAGACGTCGATCATTTCTCCGACGCCGGAGGCGCTCACGCTTACTTTAGCCCATTTAAAGTCGTCGCAGGCTTCTTCGTCTTGCTCTTCTTCCCCTTCTTCGCCTTCTTCCCCTTTTCGGATTAGGTTTCCCAAGCCCCCTTCTGGGCTTTCGGCGGCAGCGGCAGCGGTGGCGGTGGCTTCCACTTCTTCTCCTTCGTCGTCGTCGTCAAGCGCGATCTTGAAGAGGAAGAGACCGGCTAGGTTGGATATTCCGTTGACGCCATTGAGTTTTGGGGCTCCGGTGATGCCGTCGCCATCGTCGTTCAGGGAGGTGGTGGAGGCCGAGAGAGATGGGTATTCTGTGTATTGTAAGAGAGGGAGGAGGAGAATTGCGATGGAAGATCGCTATTCTGCCGCTATTGATCTTCGAGGAAATTCCAAAGAGGGGTTTTTTGGTGTATTTGATGGGCATGGAGGTGCGAAGGCTGCAGAATTTGCAGCAAATAACTTAGAGAAGAACGTTATGAATGAAATTGAAAGACTGGCTGATAATGAAACTGATTTTGAACAAGCCATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGTGGTGGTTCATGTTGTGTGACAGCCTTGATCAAGAAAGGCAACCTTGTTATCTCCAACGCCGGTGACTGCCGTGCCGTTCTCAGCAGCCAAGGTGTTGCCGAGGCCATCACCTCCGACCACCGCCCGTCTCGGGAAGATGAAAGGCGCAGGATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGCATTTGGAGAGTCCAGGGATCTCTAGCTGTAACTAGAGCAATTGGGGATGCTCACCTCAAACAATGGGTGATAGCAGAGCCGGAGACGAGGGCAATTCGGATTGAACCTCGACACGAGTTCTTGATCTTGGCCTCAGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTGGACATTGCACATCCGTTGTGTGTAGGGATTGAGAAGGCAGAGCCATTGATGGCCTGTAAAAAGCTTGTGGAGCTCTCACTTTCAAGAGGTTCAGTTGATGACATTAGTGTAGTACTGATTCAATTGGCTAACTTCATCTAA 1176 50.34 MSVSVAVSNSPGFSPSSMFCNKTSIISPTPEALTLTLAHLKSSQASSSCSSSPSSPSSPFRIRFPKPPSGLSAAAAAVAVASTSSPSSSSSSAILKRKRPARLDIPLTPLSFGAPVMPSPSSFREVVEAERDGYSVYCKRGRRRIAMEDRYSAAIDLRGNSKEGFFGVFDGHGGAKAAEFAANNLEKNVMNEIERLADNETDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVISNAGDCRAVLSSQGVAEAITSDHRPSREDERRRIESTGGYVDLCNGIWRVQGSLAVTRAIGDAHLKQWVIAEPETRAIRIEPRHEFLILASDGLWETVSNQEAVDIAHPLCVGIEKAEPLMACKKLVELSLSRGSVDDISVVLIQLANFI 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 645667 647207 - CcPI632755_03g000650.1 Cco03g0065 173424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0065 391 SMART PP2C_SIG_2 142 387 IPR001932 -
Cco03g0065 391 CDD PP2Cc 133 387 IPR001932 -
Cco03g0065 391 PANTHER PROTEIN PHOSPHATASE 121 385 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco03g0065 391 SUPERFAMILY PP2C-like 133 388 IPR036457 -
Cco03g0065 391 ProSitePatterns PPM-type phosphatase domain signature. 165 173 IPR000222 GO:0043169(InterPro)
Cco03g0065 391 SMART PP2C_4 126 385 IPR001932 -
Cco03g0065 391 ProSiteProfiles PPM-type phosphatase domain profile. 133 387 IPR001932 -
Cco03g0065 391 Pfam Protein phosphatase 2C 138 380 IPR001932 -
Cco03g0065 391 Coils Coil 182 202 - -
Cco03g0065 391 Gene3D - 134 390 IPR036457 -
Cco03g0065 391 FunFam probable protein phosphatase 2C 25 126 390 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0065 Cco-Chr3:645667 Cco07g0453 Cco-Chr7:5351272 6.90E-94 dispersed
Cco03g0065 Cco-Chr3:645667 Cco07g0249 Cco-Chr7:2544210 2.40E-38 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0065 K17506 - csv:101207841 658.292