Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0081 ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGATGAAAGTGGTTTTTGGAACGAAGCTTGCAATGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAATTTTACAGCTTTGGAAGAACATGGACATTTGGGTTGAGCTTACTTGGCTTGGCCCCACTTGCAGAACGTGTCAGTTTTCTGACTGAGCAGATTGCATGCTGCACGGGGCCCACAGTTGGTGGGCTAGCGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATATTTGCTTTGCATCAAAACAAAGTTCATGTCTTGAAGTTTTCTCTCTTGGGTTCTATTCTCTCCAATTTACTTCTAGTCCTTGGCACATCCCTTTTCTTTGGTGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCAAAGGTGGCCAATGTGAGCTCTGTGGTGTTGCTGTTGGGATTGGTATGCCAAATGCTGCCATTGATGTTCACATTTGCATCACCCAAAATCTCAACAGATTTTTCTTTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCACAGCGTACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGAAGAGGATGAAGAAGAAAGGGCAGTGGTTGGATTTTGGAGCTCATTTGGTTGGCTGGTTGGTATGACCATAGTCATAGCTATTTTATCACAATACACTGTGGCAACAATTGAGGATGCATCAAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTTTGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATAACACTAGGGATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTATTGGATGGTGCATGGGCATCAAAATGGATCTTGATTTTGGTATACTTGAAACAACTTCTCTTGCCTTTACCATCATCTTGACTATCTTCACCTTACAGGATGGAAGTTCACATTACATCAAAGGAGTGTTTTGTCTCAAGTCTTTGCTGAATCATTCTGCTAATGCTCGAGAAAAGATTTTCAACGGAAAGTCTAAGTTCATCAAGTAA 1221 42.59 MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLMKVVFGTKLAMLFPAIPLAMAAEFYSFGRTWTFGLSLLGLAPLAERVSFLTEQIACCTGPTVGGLANATCGNATELIIAIFALHQNKVHVLKFSLLGSILSNLLLVLGTSLFFGGLSNLNKQQTFNPKVANVSSVVLLLGLVCQMLPLMFTFASPKISTDFSLLQLSRTCSLLMLTAYIAYVFFQLKTHHQFFGLPQEEEDEEERAVVGFWSSFGWLVGMTIVIAILSQYTVATIEDASKSWGVSVSFISIILLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIIGWCMGIKMDLDFGILETTSLAFTIILTIFTLQDGSSHYIKGVFCLKSLLNHSANAREKIFNGKSKFIK 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 826407 834155 + CcPI632755_03g000810.1 Cco03g0081 173440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0081 406 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 31 383 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Cco03g0081 406 NCBIfam calcium/proton exchanger 52 383 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cco03g0081 406 Pfam Sodium/calcium exchanger protein 251 383 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0081 406 Pfam Sodium/calcium exchanger protein 68 224 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0081 406 Gene3D - 242 387 IPR044880 -
Cco03g0081 406 Gene3D - 98 237 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0081 Cco-Chr3:826407 Cco07g1500 Cco-Chr7:29074926 7.00E-81 dispersed
Cco10g2192 Cco-Chr10:34992493 Cco03g0081 Cco-Chr3:826407 2.20E-112 wgd
Cco03g0081 Cco-Chr3:826407 Cco04g0890 Cco-Chr4:24556687 3.00E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0081 K07300 - csv:105436053 595.119