Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0091 | ATGGCCAACGACGTCGTTTGCCTTTTCCCCTTCCCCTCTTTCTTCCTCATTCTCATTTTCTCCTATTTCATTTGGTTTCATTTCCTCGCCCGTAAGCTCACCGGTCCGCCCGTATGGCCACTCATCGGCAGCCTTCCGGCTCTCATCTCGAACCGGCGGCGACTCCACGACTGGATGGCCGGCAACCTCCGCGCCACAGGCGGCGCCGCTACTTACCAAACCTGCACGGTGGCGCTTCCATTCATAGCTAAAAAACAAGGATTTTACACGGTCACGTGCCACCCAAGAAACATCGAGCACGTGCTCCGAACCCGGTTCGAAAATTACCCGAAAGGACCGGACTGGCAAGCGGCTTTTCACGATTTATTAGGGCAAGGGATTTTCAACAGCGACGGAGAAATTTGGCTGATTCAACGGAAGACGGCGGCGCTTGAATTCACGACGAGGACTCTCCGGCAGGCGATGGACCGGTGGGTGAATCGGACGATACGGACGCGACTATGGTGTATATTGGAGAAGGCGGCGGAGTACAAAACGGCGGTGGATTTGCAGGATTTGTTGCTCCGGTTAACATTTGATAATATTTGTGGGCTGACTTTTGGGAAAGATCCACAAACTTTGTCGCCGGAATTGCCTGCGAATCCGTTTGCTTTGGCATTTGATACCGCCACTGAGGCCACTCTTCAGCGCCTTCTTTACCCTGGTCTTTTATGGAGGTTGGAGAAGCTTCTGGGCATTGGAATGGAAAGAAGGTTGAAGAAGAGTTTGAAAGTAGTAGAAGAATACATAAACGACGCCGTTGCAGCCCGTAAACAATCTCCCTCCGACGACTTATTATCACGCTTCATGAAGAAACGCGACGGCGACCGCTTCTCCGCCGCCGTCCTCCACCGCATCGCATTAAACTTCGTCCTTGCCGGCCGAGACACCTCCTCCGTGGCTCTCACGTGGTTCTTTTGGCTAGTAATGAACCACCCACACGTAGAGGAAAAAATCATCTCCGAAATCTCAACGGTCCTCCGCCAGACACGTGGCGACGACCCACGCCGTTGGATCGAAGAACCGTTGGTATTCGACGAAGCCGACAAGTTAGTGTACTTAAAAGCCGCGTTGGCCGAAACGCTGCGTTTATACCCTTCCGTACCGCAGGATTTCAAGTATGTCGTGGCTGATGACGTGTTGCCAGATGGCACTTTTGTGCCAGCTGGTTCAACCGTGACGTATTCGATCTATTCGGTCGGGAGGATGAAGAGCATTTGGGGGGAGGATTGTGCGGAGTTTAAACCGGACCGGTGGTTGTCTCCCGCCGGGGACCGGTTCGAGGGGCCAAAGGATGCCTACAAATTTGTGGCGTTTAATGCTGGACCAAGGACTTGTTTGGGGAAGGATTTGGCTTATTTGCAAATGAAGTCCGTTGCCTCCGCCGTACTCCTCCGGTACCGGCTAGCGCCGGTTCCCGGTCACCGGGTGGAACAGAAGATGTCTCTTACACTTTTTATGAAGAACGGGCTTCGTGTTTATTTGCATCCTCGCCGGCTTGCCTAG | 1545 | 53.2 | MANDVVCLFPFPSFFLILIFSYFIWFHFLARKLTGPPVWPLIGSLPALISNRRRLHDWMAGNLRATGGAATYQTCTVALPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILEKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPANPFALAFDTATEATLQRLLYPGLLWRLEKLLGIGMERRLKKSLKVVEEYINDAVAARKQSPSDDLLSRFMKKRDGDRFSAAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEEKIISEISTVLRQTRGDDPRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPQDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCAEFKPDRWLSPAGDRFEGPKDAYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLAPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLA | 514 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 931086 | 933734 | - | CcPI632755_03g000910.1 | Cco03g0091 | 173450 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0091 | 514 | PRINTS | P450 superfamily signature | 450 | 459 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | PRINTS | P450 superfamily signature | 369 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | PRINTS | P450 superfamily signature | 459 | 470 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | PRINTS | E-class P450 group I signature | 368 | 386 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | PRINTS | E-class P450 group I signature | 449 | 459 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | PRINTS | E-class P450 group I signature | 459 | 482 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 452 | 461 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco03g0091 | 514 | PANTHER | CYTOCHROME P450 | 24 | 504 | - | - | |
| Cco03g0091 | 514 | FunFam | Cytochrome P450 | 27 | 514 | - | - | |
| Cco03g0091 | 514 | Pfam | Cytochrome P450 | 90 | 501 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | Gene3D | Cytochrome P450 | 29 | 513 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | SUPERFAMILY | Cytochrome P450 | 24 | 511 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0091 | 514 | CDD | CYP86A | 75 | 504 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco01g0265 | Cco-Chr1:2538020 | Cco03g0091 | Cco-Chr3:931086 | 5.20E-193 | dispersed | |
| Cco03g0091 | Cco-Chr3:931086 | Cco09g0436 | Cco-Chr9:3891241 | 1.90E-123 | dispersed | |
| Cco03g0091 | Cco-Chr3:931086 | Cco06g0370 | Cco-Chr6:4134889 | 9.10E-195 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0091 | K15401 | - | csv:101214516 | 982.63 |