Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0122 ATGGGGGAGGAGGAAGTGCCCATTTTGAAAACAGAACATTGGCATGAACTTAAGACGCCAGTAGCTGCTAAGAAGAAGGATGTTTCTATTCCCAATTCCCCAGGGTCAGAAGCAAAACGTTGCAGTTCTGGCTGTGCTTTTTCCAGATTGGAACACAGTAATTTGGAGTCATTAAAACGTTCTAAATCAGCTATGAAGCTTGGTGGATTGATATTGTTTTATACCATAGCTATGGCAGTAGAGACTATTGGTGGTTTGAGAGCTAACAGTCTAGCTGTAATGACAGATGCAGCCCACTTGCTTAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGCGTTTCGGGCTGGGAGGCAACACTGCAACACTCATTCGGGTATTACCGTCTTGAAGTTTTAGGTGCCCTTGTGTCTGTTCAGCTTATATGGCTGATTTCTGGGGTCTTAATCTACGAGGCGATCGACCGGATTCTTAGCCAAAAGACTAAGGTGGACGGTTTCCTTATGTTTGCCATTGCAGCTTTTGGATTCATTCTTAACTTGTTTATGGTCATGTGGCTTGGCCATAGCCACCACTCTCATTCATCTCATTGTTGTCATCATCATCATGATCATCACTCTCATCATCAGAATCACTTGGATCATGAACCTGACCATAAGGAGGAGGAGATTTTCACAGCAACCAAACAAGAGGGTGCTTCTTTGGGGTCAAAGGACAATAGTTCAATGTTGAACATAAATCTCCAAGGTGCTTATCTTCATGTCATTACTGATATGATTCAATCTATTGGTGTGATGATTTCTGGAGTCATTCTATGGTTTAAACCCGACTGGATCGTCGTTGATTTAATCTGCACTCTTGTATTTTCTGTTCTTGCTTTATCTACTACTTTCTCTATGCTTAGACGTATAGCTGGTATATTGATGGAAGGAACACCTAGGGAGATCAATATTGAGAGCCTGGAAAATGAGCTCAAGGACATCAAAGGAGTCCATTATTTGCATGACTTGCACATTTGGTCCATAACGGCCGGAAAAGTCGTGTTGTCGTGCCATGTTGTCGCCGAAGCCGGAGTTTGTTCTAGGGAGCTAATTTTGAAGATTAGAAGCCTTTGTGAAGACAGATACAATATAATTCATACTACCATACAAGTTGAGTAG 1167 42.16 MGEEEVPILKTEHWHELKTPVAAKKKDVSIPNSPGSEAKRCSSGCAFSRLEHSNLESLKRSKSAMKLGGLILFYTIAMAVETIGGLRANSLAVMTDAAHLLSDVAGFSVSLFAVCVSGWEATLQHSFGYYRLEVLGALVSVQLIWLISGVLIYEAIDRILSQKTKVDGFLMFAIAAFGFILNLFMVMWLGHSHHSHSSHCCHHHHDHHSHHQNHLDHEPDHKEEEIFTATKQEGASLGSKDNSSMLNINLQGAYLHVITDMIQSIGVMISGVILWFKPDWIVVDLICTLVFSVLALSTTFSMLRRIAGILMEGTPREINIESLENELKDIKGVHYLHDLHIWSITAGKVVLSCHVVAEAGVCSRELILKIRSLCEDRYNIIHTTIQVE 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1211555 1212721 - CcPI632755_03g001220.1 Cco03g0122 173481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0122 388 Gene3D Cation efflux protein transmembrane domain 67 310 IPR027469 -
Cco03g0122 388 NCBIfam cation diffusion facilitator family transporter 71 388 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0122 388 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 312 IPR027469 -
Cco03g0122 388 Pfam Cation efflux family 71 311 IPR002524 GO:0006812(InterPro)|GO:0008324(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco03g0122 388 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 25 388 IPR050681 GO:0005385(PANTHER)|GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0071577(PANTHER)
Cco03g0122 388 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 317 388 IPR036837 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0122 Cco-Chr3:1211555 Cco06g0090 Cco-Chr6:838235 1.80E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0122 K14689 - csv:116403740 603.594