Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0125 | ATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCCAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCGAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGGAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTGTCTATGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGCGATGCCGTCGGATCTACAGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCATCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGTAACGGGAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAACTTAGCCGAATCGAGGAAGCCGGTGGGCGAGTGATTTACTGGGACGGACCGCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTACTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATAACGAATCGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTAAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG | 1281 | 56.44 | MAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSTPLSMESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIIANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1230429 | 1232059 | + | CcPI632755_03g001250.1 | Cco03g0125 | 173484 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0125 | 426 | MobiDBLite | consensus disorder prediction | 365 | 390 | - | - | |
Cco03g0125 | 426 | CDD | PP2Cc | 110 | 420 | IPR001932 | - | |
Cco03g0125 | 426 | ProSiteProfiles | PPM-type phosphatase domain profile. | 110 | 420 | IPR001932 | - | |
Cco03g0125 | 426 | Coils | Coil | 52 | 72 | - | - | |
Cco03g0125 | 426 | Gene3D | - | 104 | 424 | IPR036457 | - | |
Cco03g0125 | 426 | FunFam | Protein phosphatase 2C 50 | 108 | 424 | - | - | |
Cco03g0125 | 426 | Pfam | Protein phosphatase 2C | 111 | 369 | IPR001932 | - | |
Cco03g0125 | 426 | Coils | Coil | 160 | 191 | - | - | |
Cco03g0125 | 426 | ProSitePatterns | PPM-type phosphatase domain signature. | 146 | 154 | IPR000222 | GO:0043169(InterPro) | |
Cco03g0125 | 426 | PANTHER | PROTEIN PHOSPHATASE | 71 | 419 | IPR015655 | GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER) | |
Cco03g0125 | 426 | SUPERFAMILY | PP2C-like | 103 | 421 | IPR036457 | - | |
Cco03g0125 | 426 | SMART | PP2C_4 | 100 | 418 | IPR001932 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0125 | Cco-Chr3:1230429 | Cco05g1048 | Cco-Chr5:9269419 | 2.60E-62 | dispersed | |
Cco03g1675 | Cco-Chr3:31391918 | Cco03g0125 | Cco-Chr3:1230429 | 4.60E-66 | transposed | |
Cco05g0917 | Cco-Chr5:7929035 | Cco03g0125 | Cco-Chr3:1230429 | 1.60E-77 | transposed | |
Cco07g0051 | Cco-Chr7:472383 | Cco03g0125 | Cco-Chr3:1230429 | 4.70E-15 | transposed | |
Cco07g0453 | Cco-Chr7:5351272 | Cco03g0125 | Cco-Chr3:1230429 | 1.80E-30 | transposed | |
Cco07g1464 | Cco-Chr7:28756270 | Cco03g0125 | Cco-Chr3:1230429 | 3.00E-63 | transposed | |
Cco08g1153 | Cco-Chr8:23347531 | Cco03g0125 | Cco-Chr3:1230429 | 2.20E-63 | transposed | |
Cco09g0019 | Cco-Chr9:141340 | Cco03g0125 | Cco-Chr3:1230429 | 1.60E-25 | transposed | |
Cco09g0324 | Cco-Chr9:2817230 | Cco03g0125 | Cco-Chr3:1230429 | 3.00E-23 | transposed | |
Cco11g0681 | Cco-Chr11:7413100 | Cco03g0125 | Cco-Chr3:1230429 | 3.40E-85 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0125 | K14497 | - | csv:101206871 | 712.99 |