Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0125 ATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCGTCCTGCGAGCCGAGCTCGCGAGTGGCCAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCGAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGGAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTGTCTATGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGCGATGCCGTCGGATCTACAGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCATCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGTAACGGGAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAACTTAGCCGAATCGAGGAAGCCGGTGGGCGAGTGATTTACTGGGACGGACCGCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTACTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATAACGAATCGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTGCCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTAAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG 1281 56.44 MAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVAGEVSTKEVSTPLSMESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIIANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1230429 1232059 + CcPI632755_03g001250.1 Cco03g0125 173484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0125 426 MobiDBLite consensus disorder prediction 365 390 - -
Cco03g0125 426 CDD PP2Cc 110 420 IPR001932 -
Cco03g0125 426 ProSiteProfiles PPM-type phosphatase domain profile. 110 420 IPR001932 -
Cco03g0125 426 Coils Coil 52 72 - -
Cco03g0125 426 Gene3D - 104 424 IPR036457 -
Cco03g0125 426 FunFam Protein phosphatase 2C 50 108 424 - -
Cco03g0125 426 Pfam Protein phosphatase 2C 111 369 IPR001932 -
Cco03g0125 426 Coils Coil 160 191 - -
Cco03g0125 426 ProSitePatterns PPM-type phosphatase domain signature. 146 154 IPR000222 GO:0043169(InterPro)
Cco03g0125 426 PANTHER PROTEIN PHOSPHATASE 71 419 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco03g0125 426 SUPERFAMILY PP2C-like 103 421 IPR036457 -
Cco03g0125 426 SMART PP2C_4 100 418 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0125 Cco-Chr3:1230429 Cco05g1048 Cco-Chr5:9269419 2.60E-62 dispersed
Cco03g1675 Cco-Chr3:31391918 Cco03g0125 Cco-Chr3:1230429 4.60E-66 transposed
Cco05g0917 Cco-Chr5:7929035 Cco03g0125 Cco-Chr3:1230429 1.60E-77 transposed
Cco07g0051 Cco-Chr7:472383 Cco03g0125 Cco-Chr3:1230429 4.70E-15 transposed
Cco07g0453 Cco-Chr7:5351272 Cco03g0125 Cco-Chr3:1230429 1.80E-30 transposed
Cco07g1464 Cco-Chr7:28756270 Cco03g0125 Cco-Chr3:1230429 3.00E-63 transposed
Cco08g1153 Cco-Chr8:23347531 Cco03g0125 Cco-Chr3:1230429 2.20E-63 transposed
Cco09g0019 Cco-Chr9:141340 Cco03g0125 Cco-Chr3:1230429 1.60E-25 transposed
Cco09g0324 Cco-Chr9:2817230 Cco03g0125 Cco-Chr3:1230429 3.00E-23 transposed
Cco11g0681 Cco-Chr11:7413100 Cco03g0125 Cco-Chr3:1230429 3.40E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0125 K14497 - csv:101206871 712.99