Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0134 | ATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGACGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAGTATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCGTCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCAGGAGTCTACCAACAGTGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCAATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCACACAGTTATATGGGTATGCCGATCGCTCATCCGGGAAGCGCACAGGGATACCCTAGCTTTGAAACGCATCCTTTCAACATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA | 1005 | 49.95 | MGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLQESTNSGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPIAHPGSAQGYPSFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1297957 | 1298961 | - | CcPI632755_03g001340.1 | Cco03g0134 | 173493 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0134 | 334 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 156 | 208 | IPR006447 | GO:0003677(InterPro) | |
Cco03g0134 | 334 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cco03g0134 | 334 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 160 | 211 | IPR017930 | - | |
Cco03g0134 | 334 | MobiDBLite | consensus disorder prediction | 93 | 150 | - | - | |
Cco03g0134 | 334 | MobiDBLite | consensus disorder prediction | 96 | 150 | - | - | |
Cco03g0134 | 334 | Pfam | Myb-like DNA-binding domain | 158 | 207 | IPR001005 | - | |
Cco03g0134 | 334 | SUPERFAMILY | Homeodomain-like | 152 | 212 | IPR009057 | - | |
Cco03g0134 | 334 | Gene3D | - | 152 | 214 | - | - | |
Cco03g0134 | 334 | PANTHER | HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 20 | 303 | IPR044841 | GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cco03g0134 | 334 | FunFam | Two-component response regulator | 151 | 214 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0134 | Cco-Chr3:1297957 | Cco05g1878 | Cco-Chr5:27815117 | 3.90E-21 | dispersed | |
Cco04g0701 | Cco-Chr4:21737176 | Cco03g0134 | Cco-Chr3:1297957 | 3.50E-37 | transposed | |
Cco10g1632 | Cco-Chr10:29685087 | Cco03g0134 | Cco-Chr3:1297957 | 1.60E-36 | transposed | |
Cco02g2133 | Cco-Chr2:34117137 | Cco03g0134 | Cco-Chr3:1297957 | 3.00E-65 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58885 | PF00249 | Myb_DNA-binding | 1.40E-08 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0134 | - | - | - | 0.0 |