Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0134 ATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGACGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAGTATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCGTCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCAGGAGTCTACCAACAGTGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCAATGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCACACAGTTATATGGGTATGCCGATCGCTCATCCGGGAAGCGCACAGGGATACCCTAGCTTTGAAACGCATCCTTTCAACATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 49.95 MGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLQESTNSGHANGNGHLPVPTPMPYGPPMMPMPVLGMAASGHAHSYMGMPIAHPGSAQGYPSFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1297957 1298961 - CcPI632755_03g001340.1 Cco03g0134 173493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0134 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677(InterPro)
Cco03g0134 334 MobiDBLite consensus disorder prediction 1 20 - -
Cco03g0134 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Cco03g0134 334 MobiDBLite consensus disorder prediction 93 150 - -
Cco03g0134 334 MobiDBLite consensus disorder prediction 96 150 - -
Cco03g0134 334 Pfam Myb-like DNA-binding domain 158 207 IPR001005 -
Cco03g0134 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Cco03g0134 334 Gene3D - 152 214 - -
Cco03g0134 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 303 IPR044841 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco03g0134 334 FunFam Two-component response regulator 151 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0134 Cco-Chr3:1297957 Cco05g1878 Cco-Chr5:27815117 3.90E-21 dispersed
Cco04g0701 Cco-Chr4:21737176 Cco03g0134 Cco-Chr3:1297957 3.50E-37 transposed
Cco10g1632 Cco-Chr10:29685087 Cco03g0134 Cco-Chr3:1297957 1.60E-36 transposed
Cco02g2133 Cco-Chr2:34117137 Cco03g0134 Cco-Chr3:1297957 3.00E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58885 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0134 - - - 0.0