Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco03g0136 | ATGCTTTCTCTTCTGTGTTTATTTGGCCTCTTTGTCTTCCTGCTTTGCCTCCAATGGCGCCACCCCAAACACAAACTTCTCCCTCCCGGCTCCATGGGTTGGCCTTATATAGGCGAAACCTTCAAACTCTACACCCAAAACCCAAACTCTTTTTTCTCCATTAGGCAAAAAAGATATGGGGATGTTTTTAAGACACATATATTGGGTTGTCCTTGTGTGATGATTTCAAGTCCAAAGGCTGCAAGAGTTGTGCTTGTGAGTAAGGCTCATCTGTTCAAGCCAACTTATCCACCAAGCAAAGAGAAAATGATAGGTCCTCAAGCTTTGTTCTTCCATCAAGGCCCTTACCATTCTCACCTTAAGAAGTTGATTCAAGCTTCCTTTTTGCCATCTGCTATTAAAGGCTCTATCTCTCAAATTGAGAACATTGTCCTCCACCTTCTCCCCTCTTGGAATAACTCCCAAATCAACACCTTGCAACAAATGAAAAGGTTTGCATTTGATGTGGCAATGATATCAGCTTTTGGAGACCAACAAGACTTGGAAATTGAAAGAATCAAACATTTGTACCAATGCCTTGAAAAAGGCTACAATTCTATGCCTCTCGATCTTCCCGGAACTCCTTTCCGCAAAGCAATGAAGGCGAGGAAGGTGCTGAGTGAGACATTGGGGCAATTGATAGAGAAGAGACGGCGGAGCAAAGAGCATGGAGGTGGGTTGCTGGCGGTGCTACTGGGCGGCGGTGGAGAAGAGGCAGAGGATGAGAAAAAGAAGCTGAGTGATTCACAAATAGCAGATAATATAATAGGAGTAATATTTGCGGCACAAGACACGACAGCTAGTGTTTTAACATGGATTCTTAAGTACTTACACGACAATCACCATCTTCTCCAAGCTGTTCAGAAGGAGCAAGAGGCAATTTTTCAGAGGAAAGTGTGCGAAGGAAACCGTGGCCTTTTGTGGGATGATACGAGGCGCATGCCCTTCACTAGTCGGGTGATCCTAGAAACTCTAAGAAGAGCAAGTGTTGTGTCATTCACATTCAGGGAAGCAGTAGAAGAGGTTGAATTTGAAGGTTATTTAATCCCAAGAGGATGGAAAGTTCTTCCACTCTTCAGAACCATTCATCACTCTCCTGATTTCTTCCCACACCCCGAGAACTTTGATCCTTCAAGATTCGAGGTGCCACCTAGACCGAACACATATATGCCATTTGGCAATGGAGTGCACTCGTGTCCAGGCAGTGAGATGGCTAAGCTTGAAATGCTTGTTCTTCTCTACCACCTCACCACCACTTACAGATGGAAAGTGGTGGGAGAGGAATCTGGAATACAATACGGTCCATTTCCTGTACCTAAAGGCCCTCCTCTCCTCTCTTTGAAGTGTGAAAGGGCAAAGGACAAAGGACAAAGCTTGGCCTTGCTAAGGCAATGGCAGAGGCAGCAACAACAAACTTTTGGATTTACCATAGCCATCCACAGGCATCCTGAAATGATTGAACATCTGATGCTTGACAATAGTGAATCTATCAGAGCATGA | 1539 | 44.64 | MLSLLCLFGLFVFLLCLQWRHPKHKLLPPGSMGWPYIGETFKLYTQNPNSFFSIRQKRYGDVFKTHILGCPCVMISSPKAARVVLVSKAHLFKPTYPPSKEKMIGPQALFFHQGPYHSHLKKLIQASFLPSAIKGSISQIENIVLHLLPSWNNSQINTLQQMKRFAFDVAMISAFGDQQDLEIERIKHLYQCLEKGYNSMPLDLPGTPFRKAMKARKVLSETLGQLIEKRRRSKEHGGGLLAVLLGGGGEEAEDEKKKLSDSQIADNIIGVIFAAQDTTASVLTWILKYLHDNHHLLQAVQKEQEAIFQRKVCEGNRGLLWDDTRRMPFTSRVILETLRRASVVSFTFREAVEEVEFEGYLIPRGWKVLPLFRTIHHSPDFFPHPENFDPSRFEVPPRPNTYMPFGNGVHSCPGSEMAKLEMLVLLYHLTTTYRWKVVGEESGIQYGPFPVPKGPPLLSLKCERAKDKGQSLALLRQWQRQQQQTFGFTIAIHRHPEMIEHLMLDNSESIRA | 512 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1319383 | 1328971 | - | CcPI632755_03g001360.1 | Cco03g0136 | 173495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco03g0136 | 512 | Gene3D | Cytochrome P450 | 19 | 461 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | SUPERFAMILY | Cytochrome P450 | 20 | 459 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | P450 superfamily signature | 332 | 343 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | P450 superfamily signature | 274 | 291 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | P450 superfamily signature | 403 | 412 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | P450 superfamily signature | 412 | 423 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | E-class P450 group I signature | 331 | 349 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | E-class P450 group I signature | 263 | 280 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | E-class P450 group I signature | 283 | 309 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | E-class P450 group I signature | 371 | 395 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | E-class P450 group I signature | 402 | 412 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | E-class P450 group I signature | 412 | 435 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PRINTS | E-class P450 group I signature | 56 | 75 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | PANTHER | CYTOCHROME P450 26 | 27 | 445 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Cco03g0136 | 512 | CDD | CYP90-like | 55 | 453 | - | - | |
| Cco03g0136 | 512 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 405 | 414 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco03g0136 | 512 | Pfam | Cytochrome P450 | 28 | 440 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco03g0136 | 512 | FunFam | Abscisic acid 8 | 18 | 461 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco03g0136 | Cco-Chr3:1319383 | Cco07g1185 | Cco-Chr7:25711183 | 3.00E-153 | dispersed | |
| Cco03g0136 | Cco-Chr3:1319383 | Cco05g2251 | Cco-Chr5:31238407 | 2.70E-146 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco03g0136 | K09843 | - | csv:101216531 | 840.106 |