Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0141 ATGGCGAAGCCAAGCGAAGGGCTTCCTAGAACCATCGTCGCCGTCAGAAATGGCCCGACACTAGGCCTTCTGACTCTTAAATACCCTAAAATATTCCCAATCCGTGTTCATATTTCCAAATTTCCACCGATTCTCTTCACATTTCCTTCAAATCTTTTCTGGGTCTTTCGTTTCTCATCTCACTCATCAAACCCTTTCAATTTTATGGATAATCTCCTTGAAGATTTTCCCAATTCCTGGAATAATTATCACTTCTATCCCCATCTCTCTAATGGCTTGTTCAAAGTCAATCGCGAATCCGTTGATCCCCTTCAAATTCCGGCCAAACCCCAGCAGCATCAACACCAACTCAGTAATAATTCCTCTTCTTCGCCGTCGTCGTCGAGCTCCGAAGGTGACTCGCCTGACAGCCATGACACTTCCAATACGATGCTCAAATACATCACCGAGATGCTGATGGATGAAGGAGAAGATCTCAAAACACAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGCCAGAAGTATCCCCCTTCTCCAATCGGAAATGGCGATTCTTCTCAGGATTTCAGCTGTGATAGGGCTGTGAGTAATAACGGTGAAGATGAATCGGAATCTTTATATGGTAACTCCTCTGTTTTTGCCCCTTTTCAAAACTCTCTTTTGAATCAAGATTCGTTTCTTGGGATGCAATTTATTGGGCATTTTAGGCAAGGAGCTGAAGAGGCTAGCAAGTTTCTTCCTGTTAATGGAAGATTTGGAACCATTGACTTGGATAATGATTCTTCTACCTCTCTTCCCTCTAGGGCTGTTGATTTTTCTTGGGTTGGTGCTGAAAATGATGGTAGATCCAGCCTTGAAAATGGGTTATTAAGAGAGAAGAAAAACCGTCTAAGGGAGGATAGTGATGAGGAGTTGAGAAGTAGTAAACAATCTGCTAACTTTGCCGATGATAATTCACTGTCTGATTTGTTTGATGAGGTTCTTCTTTGTCGGGGTGAGAGTCGGCAGTCCCCATCGTGTGGTTCCGATGAATCGTCGGAGAGCGAAGCGAATAAGAAGTCGAGAGGGAGAGGGAAAAGGAAAGGGAAGAAGACCACTCGTTCTAGGAAGCAAGAGAATAGTGTAGGAGTTGTGGATTTGTGGACATTGTTGACTCAATGTGCTCAGGCTGTTTCAAATTATGATCAAAGAACTGCAAATGAGTTGCTAAATCAGATTAGGCAGCATTCTAATCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTTGCCAAGGGTCTCGAGACTCGGCTCGCTGCCGGGACGCCTCTGTATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCTTGCCCATTTCGGCGGATGTCGTATTTCTATGCCAATAGAACGATTCTGAAGCTAGCTGAGAAAGTAACAACTTTGCATATTGTTGATTTTGGTATTTTGTATGGTCTCCAATGGCCTTGCTTGATTCAACGGCTCTCGCGTAGACCTGGTGGACCTCCCAAACTTCGGATCACGGGGATTGAGCTTCCCCAGCCGGGATTCCGACCTGCTGAACGTGTTGAGCAGACTGGCCGTCGCCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAGAAATGGGAAACGGTTCGATATGAGGATCTCAATCTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTCCGAATGAAGAACGTACCCGACGAAACGGTGGTTGCAAACAGCCCAAGAGACAGGGTTCTAAAGTTAATCAGGAAAATCAACCCAGATCTCTTCATTCATGAAGTCACCAATGGCTCATTCAATACTCCATTCTTCAACACAAGGTTTAAGGAAGCACTCTTTTACTACTCATCGTTATTCGACATGTATGAGGCAACTGTACCTCGAGACAATCCGCAGAGGCATCTTTGTGAGAAGGAAATCCTAGGAAGAGACATCATGAATGTCATAGCGTGCGAGGGGCTCGAGAGAGTCGAAAGGCCAGAGACTTACAAGCAATGGCAAGTAAGGAACACGAGGGCTGGGTTCAAACAAGTACCATTAGACCAAGATCTGCTGAAGAGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGTGATCGATCAGGATGGGTCGTGGATGTTGCAAGGGTGGAAGGGACGGATCATCGACGCGTTATCGTGTTGGGTAGTTGCCTAA 2295 44.88 MAKPSEGLPRTIVAVRNGPTLGLLTLKYPKIFPIRVHISKFPPILFTFPSNLFWVFRFSSHSSNPFNFMDNLLEDFPNSWNNYHFYPHLSNGLFKVNRESVDPLQIPAKPQQHQHQLSNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEGEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPIGNGDSSQDFSCDRAVSNNGEDESESLYGNSSVFAPFQNSLLNQDSFLGMQFIGHFRQGAEEASKFLPVNGRFGTIDLDNDSSTSLPSRAVDFSWVGAENDGRSSLENGLLREKKNRLREDSDEELRSSKQSANFADDNSLSDLFDEVLLCRGESRQSPSCGSDESSESEANKKSRGRGKRKGKKTTRSRKQENSVGVVDLWTLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYANRTILKLAEKVTTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRHLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFVIDQDGSWMLQGWKGRIIDALSCWVVA 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1373861 1376155 - CcPI632755_03g001410.1 Cco03g0141 173500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0141 764 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 366 761 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cco03g0141 764 MobiDBLite consensus disorder prediction 305 324 - -
Cco03g0141 764 MobiDBLite consensus disorder prediction 190 216 - -
Cco03g0141 764 ProSiteProfiles GRAS family profile. 383 762 IPR005202 -
Cco03g0141 764 MobiDBLite consensus disorder prediction 191 216 - -
Cco03g0141 764 MobiDBLite consensus disorder prediction 108 141 - -
Cco03g0141 764 MobiDBLite consensus disorder prediction 305 322 - -
Cco03g0141 764 MobiDBLite consensus disorder prediction 346 383 - -
Cco03g0141 764 Pfam GRAS domain family 394 761 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0141 Cco-Chr3:1373861 Cco05g1320 Cco-Chr5:13769902 2.20E-43 dispersed
Cco02g0162 Cco-Chr2:1624492 Cco03g0141 Cco-Chr3:1373861 4.90E-32 transposed
Cco03g0873 Cco-Chr3:10432190 Cco03g0141 Cco-Chr3:1373861 1.40E-40 transposed
Cco04g1500 Cco-Chr4:30425281 Cco03g0141 Cco-Chr3:1373861 1.40E-32 transposed
Cco04g1920 Cco-Chr4:33633377 Cco03g0141 Cco-Chr3:1373861 2.40E-52 transposed
Cco05g2342 Cco-Chr5:31932949 Cco03g0141 Cco-Chr3:1373861 9.30E-39 transposed
Cco06g1218 Cco-Chr6:21893271 Cco03g0141 Cco-Chr3:1373861 3.10E-44 transposed
Cco09g0093 Cco-Chr9:821970 Cco03g0141 Cco-Chr3:1373861 2.10E-16 transposed
Cco09g0972 Cco-Chr9:9199729 Cco03g0141 Cco-Chr3:1373861 6.40E-56 transposed
Cco10g0442 Cco-Chr10:5210510 Cco03g0141 Cco-Chr3:1373861 6.50E-58 transposed
Cco10g2105 Cco-Chr10:34362288 Cco03g0141 Cco-Chr3:1373861 1.60E-150 wgd
Cco02g2141 Cco-Chr2:34191314 Cco03g0141 Cco-Chr3:1373861 1.30E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58886 PF03514 GRAS 5.30E-115 CL0063 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0141 K27753 - csv:101217374 1228.77