Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0148 ATGGCTAAAACCGCCATTCTCCTCTGCATTGCGACTATCATTTCAACGATGTGGACGGCCGGCGCCAGAATTCCCGGCGTTTACTCCGGCGGCCCATGGGAGAGTGCCCATGCCACGTTCTACGGCGGCTCCGATGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTTAACAATGGGCTGAGCTGCGGCGCCTGTTTCGAAATCAAATGTGCAAATGACCCGAGATGGTGCCATTCCGGCAGCCCGTCGATTATTATTACGGCCACTAATTTCTGTCCGCCGAACTTTGCTTTGCCCAGTGACAATGGCGGATGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTTAAGATCGCTGAGTATCGCGCCGGAATCGTCCCCGTCGCCTACCGCCGAGTGGCATGCCGGAAGCAAGGGGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTGTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACCGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGAGTTGGTGGGCCAGGCCTTGTCTTTTAGAGTCACAGGCAGTGACAGACGGACTTCCACCTCCTTCAACGTGGCGCCTTCTGATTGGCAGTTCGGTCAGACCTTCACCGGCAAGAATTTTAGGGTTTGA 780 55.9 MAKTAILLCIATIISTMWTAGARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIIITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAELVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1469472 1471201 + CcPI632755_03g001480.1 Cco03g0148 173507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0148 259 FunFam Expansin 22 161 - -
Cco03g0148 259 CDD DPBB_EXPA_N 32 160 - -
Cco03g0148 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 SMART dpbb_1 68 155 IPR007112 -
Cco03g0148 259 Gene3D - 21 161 IPR036908 -
Cco03g0148 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cco03g0148 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cco03g0148 259 FunFam Expansin 165 257 - -
Cco03g0148 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cco03g0148 259 PANTHER EXPANSIN-A15 10 257 IPR002963 GO:0009664(InterPro)
Cco03g0148 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cco03g0148 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cco03g0148 259 Gene3D - 165 257 IPR036749 -
Cco03g0148 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Cco03g0148 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cco03g0148 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cco03g0148 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cco03g0148 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Cco03g0148 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
Cco03g0148 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0148 Cco-Chr3:1469472 Cco09g2168 Cco-Chr9:36068482 2.80E-120 dispersed
Cco01g0893 Cco-Chr1:9852810 Cco03g0148 Cco-Chr3:1469472 7.00E-74 transposed
Cco02g0342 Cco-Chr2:3135073 Cco03g0148 Cco-Chr3:1469472 6.20E-74 transposed
Cco02g2145 Cco-Chr2:34230991 Cco03g0148 Cco-Chr3:1469472 9.70E-137 wgd
Cco03g0148 Cco-Chr3:1469472 Cco04g1004 Cco-Chr4:25639013 1.00E-133 wgd
Cco03g0148 Cco-Chr3:1469472 Cco07g0335 Cco-Chr7:3494809 1.70E-133 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0148 - - - 0.0