Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0164 | ATGAGCAAAAGCGCCGTTACAACAAACGTCAAAACTTCTAAATCCGTTTCTGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCACGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAGTTGCAATATCCGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAACCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGATAAAAATAACAAGGCCCCAATCATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCGTCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGCGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACACAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACTGAGCCTGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCCGCAAAGGCAGTGCCGGTTCTGGTAGATGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCGGCTGCAGTTCTCGTGCACCTCTGCTCAGGAGACGAGCAACACCTAGTAGAGGCCAGGGCACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTTGAGCACGCGGCACATCAGGAGGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGAAAGTAGAAAAGGGGGAAGAAAGAAAATGTTTGTAAGTAAAATGGTTGGCAATGGTGCAAGGAAGAAAGATGCTAAGACAGAGCAAAGAGGAGAAGGGGTGGCAGCTGCTTTACAGTGGGGTGCAGCTTTGTTATGGCTATGA | 2202 | 46.91 | MSKSAVTTNVKTSKSVSAMEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRLRRLSEKLQLVAISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTENLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARALGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQEELRVLRLQSSESQPQSQPSQSTSTTEVVESRKGGRKKMFVSKMVGNGARKKDAKTEQRGEGVAAALQWGAALLWL | 733 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1593850 | 1601164 | + | CcPI632755_03g001640.1 | Cco03g0164 | 173523 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0164 | 733 | PANTHER | U BOX DOMAIN-CONTAINING | 46 | 649 | - | - | |
Cco03g0164 | 733 | MobiDBLite | consensus disorder prediction | 245 | 274 | - | - | |
Cco03g0164 | 733 | Pfam | U-box domain | 276 | 346 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco03g0164 | 733 | SUPERFAMILY | ARM repeat | 374 | 647 | IPR016024 | - | |
Cco03g0164 | 733 | MobiDBLite | consensus disorder prediction | 252 | 271 | - | - | |
Cco03g0164 | 733 | FunFam | RING-type E3 ubiquitin transferase | 550 | 668 | - | - | |
Cco03g0164 | 733 | CDD | MLKL_NTD | 28 | 156 | - | - | |
Cco03g0164 | 733 | ProSiteProfiles | U-box domain profile. | 275 | 349 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco03g0164 | 733 | SMART | arm_5 | 403 | 443 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | SMART | arm_5 | 567 | 607 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | SMART | arm_5 | 485 | 525 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | SMART | arm_5 | 609 | 649 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | SMART | arm_5 | 526 | 566 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | SMART | arm_5 | 444 | 484 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | Gene3D | - | 361 | 693 | IPR011989 | - | |
Cco03g0164 | 733 | SMART | Ubox_2 | 279 | 342 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco03g0164 | 733 | Pfam | Armadillo/beta-catenin-like repeat | 486 | 524 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | Pfam | Armadillo/beta-catenin-like repeat | 403 | 442 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | Pfam | Armadillo/beta-catenin-like repeat | 568 | 607 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | Gene3D | - | 25 | 135 | IPR036537 | GO:0007166(InterPro) | |
Cco03g0164 | 733 | CDD | RING-Ubox_PUB | 277 | 329 | IPR045210 | - | |
Cco03g0164 | 733 | FunFam | RING-type E3 ubiquitin transferase | 359 | 510 | - | - | |
Cco03g0164 | 733 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 537 | 579 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 414 | 456 | IPR000225 | GO:0005515(InterPro) | |
Cco03g0164 | 733 | MobiDBLite | consensus disorder prediction | 665 | 716 | - | - | |
Cco03g0164 | 733 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 276 | 349 | IPR013083 | - | |
Cco03g0164 | 733 | FunFam | RING-type E3 ubiquitin transferase | 23 | 136 | - | - | |
Cco03g0164 | 733 | MobiDBLite | consensus disorder prediction | 665 | 686 | - | - | |
Cco03g0164 | 733 | FunFam | RING-type E3 ubiquitin transferase | 276 | 349 | - | - | |
Cco03g0164 | 733 | Pfam | Mixed lineage kinase domain-like N-terminal domain | 47 | 134 | IPR054000 | - | |
Cco03g0164 | 733 | SUPERFAMILY | RING/U-box | 273 | 352 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1435 | Cco-Chr1:26127504 | Cco03g0164 | Cco-Chr3:1593850 | 2.30E-10 | dispersed | |
Cco02g1080 | Cco-Chr2:14726512 | Cco03g0164 | Cco-Chr3:1593850 | 7.70E-82 | dispersed | |
Cco03g0164 | Cco-Chr3:1593850 | Cco05g2381 | Cco-Chr5:32309586 | 5.40E-116 | dispersed | |
Cco06g0985 | Cco-Chr6:13377838 | Cco03g0164 | Cco-Chr3:1593850 | 3.00E-16 | transposed | |
Cco08g1897 | Cco-Chr8:29988417 | Cco03g0164 | Cco-Chr3:1593850 | 2.20E-35 | transposed | |
Cco11g1436 | Cco-Chr11:27123540 | Cco03g0164 | Cco-Chr3:1593850 | 8.90E-37 | transposed | |
Cco02g2163 | Cco-Chr2:34366997 | Cco03g0164 | Cco-Chr3:1593850 | 5.00E-161 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0164 | K27628 | - | csv:101218572 | 1133.24 |