Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0164 ATGAGCAAAAGCGCCGTTACAACAAACGTCAAAACTTCTAAATCCGTTTCTGCTATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGCAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCACGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTACGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCCGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAGTTGCAATATCCGATCTTACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAACCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGATAAAAATAACAAGGCCCCAATCATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCTTCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCGTCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCCGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAAGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGCGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACACAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTGAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACTGAGCCTGGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCCGCAAAGGCAGTGCCGGTTCTGGTAGATGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCGGCTGCAGTTCTCGTGCACCTCTGCTCAGGAGACGAGCAACACCTAGTAGAGGCCAGGGCACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTTGAGCACGCGGCACATCAGGAGGAGCTTCGGGTGCTTCGGTTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGAAAGTAGAAAAGGGGGAAGAAAGAAAATGTTTGTAAGTAAAATGGTTGGCAATGGTGCAAGGAAGAAAGATGCTAAGACAGAGCAAAGAGGAGAAGGGGTGGCAGCTGCTTTACAGTGGGGTGCAGCTTTGTTATGGCTATGA 2202 46.91 MSKSAVTTNVKTSKSVSAMEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRLRRLSEKLQLVAISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTENLETDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPGTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARALGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQEELRVLRLQSSESQPQSQPSQSTSTTEVVESRKGGRKKMFVSKMVGNGARKKDAKTEQRGEGVAAALQWGAALLWL 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1593850 1601164 + CcPI632755_03g001640.1 Cco03g0164 173523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0164 733 PANTHER U BOX DOMAIN-CONTAINING 46 649 - -
Cco03g0164 733 MobiDBLite consensus disorder prediction 245 274 - -
Cco03g0164 733 Pfam U-box domain 276 346 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco03g0164 733 SUPERFAMILY ARM repeat 374 647 IPR016024 -
Cco03g0164 733 MobiDBLite consensus disorder prediction 252 271 - -
Cco03g0164 733 FunFam RING-type E3 ubiquitin transferase 550 668 - -
Cco03g0164 733 CDD MLKL_NTD 28 156 - -
Cco03g0164 733 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco03g0164 733 SMART arm_5 403 443 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 SMART arm_5 567 607 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 SMART arm_5 485 525 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 SMART arm_5 609 649 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 SMART arm_5 526 566 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 SMART arm_5 444 484 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 Gene3D - 361 693 IPR011989 -
Cco03g0164 733 SMART Ubox_2 279 342 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco03g0164 733 Pfam Armadillo/beta-catenin-like repeat 486 524 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 Pfam Armadillo/beta-catenin-like repeat 403 442 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 Pfam Armadillo/beta-catenin-like repeat 568 607 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 Gene3D - 25 135 IPR036537 GO:0007166(InterPro)
Cco03g0164 733 CDD RING-Ubox_PUB 277 329 IPR045210 -
Cco03g0164 733 FunFam RING-type E3 ubiquitin transferase 359 510 - -
Cco03g0164 733 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515(InterPro)
Cco03g0164 733 MobiDBLite consensus disorder prediction 665 716 - -
Cco03g0164 733 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 349 IPR013083 -
Cco03g0164 733 FunFam RING-type E3 ubiquitin transferase 23 136 - -
Cco03g0164 733 MobiDBLite consensus disorder prediction 665 686 - -
Cco03g0164 733 FunFam RING-type E3 ubiquitin transferase 276 349 - -
Cco03g0164 733 Pfam Mixed lineage kinase domain-like N-terminal domain 47 134 IPR054000 -
Cco03g0164 733 SUPERFAMILY RING/U-box 273 352 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1435 Cco-Chr1:26127504 Cco03g0164 Cco-Chr3:1593850 2.30E-10 dispersed
Cco02g1080 Cco-Chr2:14726512 Cco03g0164 Cco-Chr3:1593850 7.70E-82 dispersed
Cco03g0164 Cco-Chr3:1593850 Cco05g2381 Cco-Chr5:32309586 5.40E-116 dispersed
Cco06g0985 Cco-Chr6:13377838 Cco03g0164 Cco-Chr3:1593850 3.00E-16 transposed
Cco08g1897 Cco-Chr8:29988417 Cco03g0164 Cco-Chr3:1593850 2.20E-35 transposed
Cco11g1436 Cco-Chr11:27123540 Cco03g0164 Cco-Chr3:1593850 8.90E-37 transposed
Cco02g2163 Cco-Chr2:34366997 Cco03g0164 Cco-Chr3:1593850 5.00E-161 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0164 K27628 - csv:101218572 1133.24