Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0165 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCACCAGCAATCAAATCATCATCATCGCCACCATCCTCAGATAAGTAGTAATAATAATGGATCTCCTCAACACCAACACCACCTTCTTTTATTGCCTACTCAACAACTCTCCTCCGCACCGTTGTCTCATGTCAGTGGCGGCGGTGGAGTTAGCTCAATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCGGAGACGGCACTCAAGTGTCCTCGATGTGATTCAACCAACACGAAGTTTTGTTACTTTAATAACTATAGTCTCTCTCAGCCTCGCCACTTTTGTAAGAGCTGCCGCAGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTCCCGGTTGGGGGCGGTTGTCGCCGGAATAAGAAGAATAAAACTAGACGCTCGAAGTCTCCGGCTGCAGCTCCGGCCGGAAATGAAACTCAAGTGATGAATAACAATTCAAACTCACCCACCACTACTACAATACCCTTGCACAGTAGTGCTGAGAATATTATTGGTCATTTACAGCCTCAACATCCTCACCTTTCATTCATGGCTTCATTGAATAATTTTTCTCGATACGGGACAACGAGTTTAGGGTTGAATTTCAACGAGATCCAGGCTCAAGGTAACGATATCGGCAACGGCGCCCTTGTGAATCATCATCTGTGGCGTGGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCCACCCGGGTTGTACCCGTTTCAAATTAGCGGCGGGGACGGCGACGTCAACACAACAAATTCAATCCTAACACCAAATTCAAGGGCAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTGCTGAATTTGTTGAAATCATCCAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGAAATGAAGCCCCTATTGATCAGATCATCATCTTCAAATTGGCATCTCTCAGCTCACAGCTTTGTAGCACTCTTCTAGCTCTCTTCAGCCTCTGA 1047 46.61 MDFSSVPIYLDPPPNWHQQSNHHHRHHPQISSNNNGSPQHQHHLLLLPTQQLSSAPLSHVSGGGGVSSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPAAAPAGNETQVMNNNSNSPTTTTIPLHSSAENIIGHLQPQHPHLSFMASLNNFSRYGTTSLGLNFNEIQAQGNDIGNGALVNHHLWRGSQNFPLSGGLETPPGLYPFQISGGDGDVNTTNSILTPNSRATHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGNEAPIDQIIIFKLASLSSQLCSTLLALFSL 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1615655 1617138 + CcPI632755_03g001650.1 Cco03g0165 173524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0165 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 85 202 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco03g0165 348 MobiDBLite consensus disorder prediction 11 41 - -
Cco03g0165 348 Pfam Dof domain, zinc finger 89 144 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco03g0165 348 MobiDBLite consensus disorder prediction 156 171 - -
Cco03g0165 348 ProSitePatterns Zinc finger Dof-type signature. 92 128 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco03g0165 348 ProSiteProfiles Zinc finger Dof-type profile. 90 144 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco03g0165 348 MobiDBLite consensus disorder prediction 135 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0165 Cco-Chr3:1615655 Cco07g0327 Cco-Chr7:3355164 6.50E-43 dispersed
Cco10g2091 Cco-Chr10:34267190 Cco03g0165 Cco-Chr3:1615655 3.40E-41 wgd
Cco02g2164 Cco-Chr2:34377155 Cco03g0165 Cco-Chr3:1615655 9.60E-36 wgd
Cco03g0165 Cco-Chr3:1615655 Cco04g1020 Cco-Chr4:25795764 7.60E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58887 PF02701 zf-Dof 1.50E-32 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0165 - - - 0.0