Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0170 ATGGCGAAAACCCTAATTTCATCTTCACCCTTCGTCGGTTCTTCTCTCCCATCTCTCTCTCGCCATACTCGTCTCCACACTCTTCCTCACCGGAGACACGTCGCCACCAGAGTCAATTTCAGCTTCCATCAACTTCCCCCCATACATACCTTTGATTCTGCCTTCGATTTTCAAGCAATTGTTAGCAGAGCCGAAGGCCTGCTCTATACACTTGCTGACGCAGCGGTTGCAGTGGATTCCACTGTTTCAGGTGGCGCCGCATCCACTTCCGCTGATACCGCGGTGCAGAAGAATGGCGGATGGTTTGGATTTATCTCCGAGGCCATGGAAGTGGTCCTTAAAGTGTTGAAGGATGGACTTGCGGCTGTGCACGTCCCATATTCATACGGATTTGCAATTATTTTACTTACTGTTATCGTTAAAGTTGCAACTTTTCCCCTCACTAAGCAGCAGGTTGAGTCAACATTGGCTATGCAAAATCTTCAACCGAAGATTAAAGCCATCCAACAAAGATATGCAGGCAATCAGGAAAGAATACAACTTGAGACATCACGGCTTTATAGACAAGCAGGAGTTAATCCTTTGGCAGGTTGTTTCCCAACTTTAGCCACCATACCTGTCTGGATTGGCCTATATCAGGCCCTTTCTAATGTGGCAAATGAGGGATTATTGACTGAAGGTTTCTTTTGGATCCCCTCTCTCGGTGGTCCAACTACTATTGCTGCTCGACAAAGTGGATCTGGAATTTCTTGGTTGTTTCCTTTTGTGGATGGCCATCCACCATTGGGCTGGTCTGACACTGCAGCATACCTTGTATTACCTGTTCTCCTCGTCATATCTCAGTATGTATCGATGGAACTCATGAAGCCTCCCCAGACTGATGATCCAGCACAAAAGAACACACTCCTTATTTTCAAGTTTCTTCCCCTCATGATCGGTTACTTCTCCTTGTCTGTTCCATCAGGATTATCAATTTACTGGTTCACAAACAATGTTCTCAGCACGGCTCAGCAAGTATGGTTACGCAAATTAGGAGGTGCAAAGCCTGTTGTAAGTGAGGATGCTGCTGGAATCATAACAGCTGGACGTGCCAAACGAACGTCTGAATCAGGAAGAAACGGTGACAGGTTTAGGCAGTTAAGGGAAGATGAGAAGAAGAATAAGTTAAGCAAGGCAGCTCGATCAGAAGAGATTCAAACTTTGGCTTCTGAGTCTGATAATGAGGATGGGTATGATAGGGAGACAATTGAGAAGGGTGAGGACAGTCTAGAAGAGGCATATGCATCAAGTGCAGACAAAGACATCCCAGCCTATAATCGACAAAAGAGAAGCAAGCGATCAAAGAGGAAACGTGCAGGAGGCTTAGCCTCTTCTTTAATTGGTGGTTTACTGTTTTGTGAGAAGTACATATCGATATCTAACGTCCTTCTGATTTGTTGTGGTTTGACACGCCTTAACAATCACGATGTTTCTGAATTTACCGACACGGCTTACTTGTCTAAGAAGGTGAGAAATATGGTGCATGAAAGGAAAATCAGTTTAAATAGCCTTGAGGAATACAAAAAGAGATGGACAGCCGAAACGCCTGCTTTGGTCATTCATTTCCTTGATGGAGGCCGATGA 1623 45.04 MAKTLISSSPFVGSSLPSLSRHTRLHTLPHRRHVATRVNFSFHQLPPIHTFDSAFDFQAIVSRAEGLLYTLADAAVAVDSTVSGGAASTSADTAVQKNGGWFGFISEAMEVVLKVLKDGLAAVHVPYSYGFAIILLTVIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGGPTTIAARQSGSGISWLFPFVDGHPPLGWSDTAAYLVLPVLLVISQYVSMELMKPPQTDDPAQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVSEDAAGIITAGRAKRTSESGRNGDRFRQLREDEKKNKLSKAARSEEIQTLASESDNEDGYDRETIEKGEDSLEEAYASSADKDIPAYNRQKRSKRSKRKRAGGLASSLIGGLLFCEKYISISNVLLICCGLTRLNNHDVSEFTDTAYLSKKVRNMVHERKISLNSLEEYKKRWTAETPALVIHFLDGGR 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1665268 1671499 + CcPI632755_03g001700.1 Cco03g0170 173529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0170 540 MobiDBLite consensus disorder prediction 361 413 - -
Cco03g0170 540 MobiDBLite consensus disorder prediction 368 393 - -
Cco03g0170 540 PANTHER OXA1 34 386 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(InterPro)|GO:0032977(PANTHER)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Cco03g0170 540 NCBIfam membrane protein insertase YidC 128 342 IPR028055 -
Cco03g0170 540 CDD 5TM_YidC_Alb3 130 343 IPR047196 -
Cco03g0170 540 Pfam 60Kd inner membrane protein 129 343 IPR028055 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0170 Cco-Chr3:1665268 Cco08g1924 Cco-Chr8:30186796 4.10E-121 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0170 K03217 - csv:101217620 785.023