Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0210 ATGGCTGATGTTGCTCAGAACAACCCCGCTGATTTTCCTGCTGTTTCAACGCATGGTGGCCAATACGTTCAGTACAATATCTTTGGGAATCCCTTCGAAATAACCTCAAAATATCGTCCCCCGATTATGCCTATAGGTCGCGGCGCATATGGAATCGTTTGTTCTGTTTTGAATTCGGAGACCAACGAAATGGTTGCGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGGACGCTCCGTGAGATTAAGCTTCTTCGCCATTTGGATCATGAAAATGTTATAGGCATTAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCGACTGAACTAATGGATACTGATCTTCACCAAATAATCCGTTCCAACCAAAGTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCCGAGGACTGAAATACATACATTCTGCCAATGTCATTCATCGAGACTTGAAACCGAGCAATCTATTGCTTAATGCAAATTGTGATCTTAAAATATGTGACTTTGGGCTTGCTCGGCCAACTTCGGAAAATGAATGTATGACGGAATATGTTGTCACAAGATGGTATAGAGCACCTGAGCTTCTATTGAACTCTGATTATACAGCTTCTATTGATATCTGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAACAGAAGGCCTTTATTCCCAGGAAGGGATCATGTGCATCAGATGCGATTATTAACTGAGCTTCTCGGCACACCAACCGAGTCAGATCTTGGTTTTATTCGAAATGAAGACTCGAAAAGATATCTTCGGCAGCTACCTCCACTTCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCATTGGCAATTGATCTTGTGGATAAAATGTTGACGTTTGACCCAAAAAAGAGAATTACTGTTGAAGAAGCGTTGGCACATCCATACCTAGAAAGATTGCATGACATAGCGGATGAGCCGGTTTGCCCAGAGCCATTCTCGTTCGAGTTTGAGCAACAATTCTTAGATGAAGAACAGATGAAGGAGATGATTTACAGAGAGGCATTAGCACTCAATCCAGAATTTGCATGA 1113 41.78 MADVAQNNPADFPAVSTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTASIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPTESDLGFIRNEDSKRYLRQLPPLPRQPLATVFPHVHPLAIDLVDKMLTFDPKKRITVEEALAHPYLERLHDIADEPVCPEPFSFEFEQQFLDEEQMKEMIYREALALNPEFA 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2174031 2177078 - CcPI632755_03g002100.1 Cco03g0210 173569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0210 370 SMART serkin_6 39 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0210 370 SUPERFAMILY Protein kinase-like (PK-like) 44 331 IPR011009 -
Cco03g0210 370 ProSiteProfiles Protein kinase domain profile. 39 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0210 370 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0210 370 Pfam Protein kinase domain 44 324 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0210 370 Gene3D Transferase(Phosphotransferase) domain 1 123 351 - -
Cco03g0210 370 FunFam Mitogen-activated protein kinase 123 351 - -
Cco03g0210 370 CDD STKc_TEY_MAPK 32 367 - -
Cco03g0210 370 Gene3D Phosphorylase Kinase; domain 1 22 361 - -
Cco03g0210 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0210 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 32 362 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco03g0210 370 FunFam Mitogen-activated protein kinase 24 133 - -
Cco03g0210 370 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0210 Cco-Chr3:2174031 Cco08g1172 Cco-Chr8:23484820 7.80E-172 dispersed
Cco03g0210 Cco-Chr3:2174031 Cco03g0219 Cco-Chr3:2267317 1.40E-149 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86633 PF00069 Pkinase 2.30E-74 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0210 K20536 - csv:101202796 720.694