Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0219 ATGAACACCCTTCCGGCGAAAATGCTTGAGAGTCTCTCTTTAATCAGAACCTTGGCGACTTTTCCCTCTTCTCACCGAGGTTCTCCCAATTATGGGCTAGTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACTACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTTCTTCTGGAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGCCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTAACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTAAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACTGATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGACGGTGGCATTCTTCCTGCTGGACGAGCAGGCTCGACGATCATTGACCTCACCAAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACACTTGAAAGACCCAACAACAAGAATATGGAGAATGATTCTTCTTCCGCTATGGAAATCAAAGGCCTTCCCACTTACGACGGCAAATACTTACTCTACAATGTTCTCGGCAACTTCTTCGAGGTATCTGCCAAGTACTCCCCTTCAATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACCAATTCTGAGACAAAAGAAGAGGTAGCGATTAAGAAGATTGGGAATGCTTTTGATAATAGGATTGATGCCAAGAGGACCCTTCGTGAGATTAAACTCCTTTGCCATATGGATCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAGAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCACCAGATCATACGCTCTACCCAGGCTCTGACAGACGATCACTGTCAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACTTGCTTCTTAATGCAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTAACACGATGGTATCGAGCCCCTGAGCTACTGCTCAACACTTCTGAATACACAGCAGCAATAGATATTTGGTCGGTTGGATGTATTCTCATGGAAATTCTTAGGAGGGAGCCACTGTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACTGAGTTGCTAGGTTCACCAGATGACTCAGATCTTGGGTTTCTTAGAAGTGATAATGCAAGGAAGTATGTTAAGCAACTTCCTTATTTCCCGAAACAACCGCTAACCGAGAAGTTCCCAGATCTTCCTCCACTAGCAGTTGATCTTGCAGAGAGGATGCTGCTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCGATGAATCACCCATATATAGTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTCGAACAGGCATCCTTGGATGAAGAAGACATAAAAGAGCTTATATGGAGGGAGTCTCTCAATTTCAATCCAAATCACATTTAG 1941 42.81 MNTLPAKMLESLSLIRTLATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSGAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGILPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERPNNKNMENDSSSAMEIKGLPTYDGKYLLYNVLGNFFEVSAKYSPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSTQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITELLGSPDDSDLGFLRSDNARKYVKQLPYFPKQPLTEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMNHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLNFNPNHI 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2267317 2279456 + CcPI632755_03g002190.1 Cco03g0219 173578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0219 646 SUPERFAMILY YrdC/RibB 75 264 IPR017945 -
Cco03g0219 646 SMART serkin_6 314 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0219 646 ProSiteProfiles YrdC-like domain profile. 73 261 IPR006070 GO:0003725(InterPro)
Cco03g0219 646 Pfam Protein kinase domain 318 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0219 646 Pfam Telomere recombination 82 259 IPR006070 GO:0003725(InterPro)
Cco03g0219 646 FunFam YrdC N6-threonylcarbamoyltransferase domain containing 66 269 - -
Cco03g0219 646 FunFam Mitogen-activated protein kinase 299 408 - -
Cco03g0219 646 ProSiteProfiles Protein kinase domain profile. 314 600 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0219 646 Gene3D DHBP synthase 66 270 - -
Cco03g0219 646 FunFam Mitogen-activated protein kinase 398 627 - -
Cco03g0219 646 Gene3D Transferase(Phosphotransferase) domain 1 398 627 - -
Cco03g0219 646 Gene3D Phosphorylase Kinase; domain 1 297 637 - -
Cco03g0219 646 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 307 637 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco03g0219 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0219 646 ProSitePatterns Protein kinases ATP-binding region signature. 320 344 IPR017441 GO:0005524(InterPro)
Cco03g0219 646 SUPERFAMILY Protein kinase-like (PK-like) 317 606 IPR011009 -
Cco03g0219 646 CDD STKc_TEY_MAPK 307 643 - -
Cco03g0219 646 ProSitePatterns MAP kinase signature. 349 452 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0219 646 NCBIfam L-threonylcarbamoyladenylate synthase 75 265 IPR006070 GO:0003725(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0247 Cco-Chr1:2338710 Cco03g0219 Cco-Chr3:2267317 1.30E-169 dispersed
Cco03g0219 Cco-Chr3:2267317 Cco06g0350 Cco-Chr6:3933151 4.50E-167 dispersed
Cco03g0210 Cco-Chr3:2174031 Cco03g0219 Cco-Chr3:2267317 1.40E-149 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86634 PF00069 Pkinase 5.30E-69 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0219 K04371 - csv:101218403 731.095