Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0222 | ATGGGTTGCTTTCGTTGTACCGGTTCATCCAGCAAGAAATCGGAGAACATCGAAGAAAACAACCCCCATACCTTCAATTCCAAAACCCACAAGCCCGTTGATCGGACGCCTTCAGATAAAGCCAAAGTAAATTCAAGTTTGGCAGTGAAGAGGGATTCTGATGTGAAGGTGGTTGTGACAAAAGATGACCAATTGGCTTTAGATGTAAAGAAATTGAATTTAAAAGATGAGGTTTCTGAGGAAGGAGAATCCAATGGCCGTGCCAAGACTTTTACGTTTGAAGAACTCGCTGCTGCGACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGCAGAAAGTTAATGAGGTTGTAGCAATCAAACAACTTGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTCGAAGTCTTGACTTTAAGTCTAGCTGATCATCCTAACCTTGTAAAACTTATTGGCTTTTGCGCTGAGGGGGATCAGAGGTTGTTGGTTTATGAATATATGCCATTGGGATCATTGGAAAACCATTTACACGATCTTCGACCCGGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGGTTGGAGTATTTGCATGAGAAGATGAAGCCTCCAGTTATATATCGTGATCTGAAATGTTCAAACATTTTGCTGGGTGAAGGATATCATCCAAAGCTATCTGATTTCGGATTGGCTAAAGTAGGTCCTAGTGGGGATAAAACCCACGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCTCCAGATTATGCAATGACGGGCCAACTGACATTCAAATCAGATATCTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCAGAGCAAAATCTTGTGGCTTGGGCGCGACCTTTGTTCCGAGACCGGAAGAAGTTCTCACAAATGGTTGATCCATTGCTCCAAGGACAATATCCAGTGAGAGGACTATACCAATCTCTAGCCATAGCCGCAATGTGTGTTCAGGAGCAACCGAATATGCGGCCAGTTATATCTGATGTGGTAACCGCCTTAAACTACCTAGCTTCCCAGAAATATGATCCCCAATCTCAACCAAACCATAGCTCCCAAAAGAGACCATCTTCTCTTAAAATGGAACAGAACGATGATAAGAGGGAACGGGACGATGATAAGAGGGAAACTTCAGACAACGAGGGTTCAGAGAGAGAGTGA | 1290 | 43.64 | MGCFRCTGSSSKKSENIEENNPHTFNSKTHKPVDRTPSDKAKVNSSLAVKRDSDVKVVVTKDDQLALDVKKLNLKDEVSEEGESNGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPLLQGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQSQPNHSSQKRPSSLKMEQNDDKRERDDDKRETSDNEGSERE | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2313428 | 2316249 | + | CcPI632755_03g002220.1 | Cco03g0222 | 173581 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0222 | 429 | FunFam | probable serine/threonine-protein kinase RLCKVII | 75 | 179 | - | - | |
Cco03g0222 | 429 | FunFam | Serine/threonine-protein kinase PBS1 | 180 | 396 | - | - | |
Cco03g0222 | 429 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Cco03g0222 | 429 | SMART | serkin_6 | 103 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0222 | 429 | MobiDBLite | consensus disorder prediction | 384 | 401 | - | - | |
Cco03g0222 | 429 | MobiDBLite | consensus disorder prediction | 384 | 429 | - | - | |
Cco03g0222 | 429 | Gene3D | Phosphorylase Kinase; domain 1 | 71 | 179 | - | - | |
Cco03g0222 | 429 | PANTHER | OS07G0668900 PROTEIN | 52 | 406 | - | - | |
Cco03g0222 | 429 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 226 | 238 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco03g0222 | 429 | Gene3D | Transferase(Phosphotransferase) domain 1 | 180 | 408 | - | - | |
Cco03g0222 | 429 | CDD | STKc_IRAK | 109 | 378 | - | - | |
Cco03g0222 | 429 | ProSitePatterns | Protein kinases ATP-binding region signature. | 109 | 132 | IPR017441 | GO:0005524(InterPro) | |
Cco03g0222 | 429 | SUPERFAMILY | Protein kinase-like (PK-like) | 89 | 399 | IPR011009 | - | |
Cco03g0222 | 429 | ProSiteProfiles | Protein kinase domain profile. | 103 | 380 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco03g0222 | 429 | MobiDBLite | consensus disorder prediction | 16 | 38 | - | - | |
Cco03g0222 | 429 | MobiDBLite | consensus disorder prediction | 402 | 429 | - | - | |
Cco03g0222 | 429 | Pfam | Protein kinase domain | 108 | 320 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g2219 | Cco-Chr2:34782653 | Cco03g0222 | Cco-Chr3:2313428 | 1.00E-147 | dispersed | |
Cco03g0222 | Cco-Chr3:2313428 | Cco10g2058 | Cco-Chr10:33962794 | 1.20E-144 | dispersed | |
Cco04g0612 | Cco-Chr4:19958233 | Cco03g0222 | Cco-Chr3:2313428 | 2.30E-22 | dispersed | |
Cco02g2275 | Cco-Chr2:35325850 | Cco03g0222 | Cco-Chr3:2313428 | 1.10E-54 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86635 | PF00069 | Pkinase | 5.70E-44 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0222 | - | - | - | 0.0 |