Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0222 ATGGGTTGCTTTCGTTGTACCGGTTCATCCAGCAAGAAATCGGAGAACATCGAAGAAAACAACCCCCATACCTTCAATTCCAAAACCCACAAGCCCGTTGATCGGACGCCTTCAGATAAAGCCAAAGTAAATTCAAGTTTGGCAGTGAAGAGGGATTCTGATGTGAAGGTGGTTGTGACAAAAGATGACCAATTGGCTTTAGATGTAAAGAAATTGAATTTAAAAGATGAGGTTTCTGAGGAAGGAGAATCCAATGGCCGTGCCAAGACTTTTACGTTTGAAGAACTCGCTGCTGCGACGGGCAATTTCAGGTCAGATTGCTTCTTGGGTGAAGGAGGATTTGGCAAAGTTTACAAGGGGTACTTGCAGAAAGTTAATGAGGTTGTAGCAATCAAACAACTTGACCGCAATGGACTTCAAGGAATTCGAGAGTTTGTTGTCGAAGTCTTGACTTTAAGTCTAGCTGATCATCCTAACCTTGTAAAACTTATTGGCTTTTGCGCTGAGGGGGATCAGAGGTTGTTGGTTTATGAATATATGCCATTGGGATCATTGGAAAACCATTTACACGATCTTCGACCCGGTGCAAAAGTAATTGATTGGAACACAAGAATGAAAATAGCAGCAGGTGCAGCGAGGGGGTTGGAGTATTTGCATGAGAAGATGAAGCCTCCAGTTATATATCGTGATCTGAAATGTTCAAACATTTTGCTGGGTGAAGGATATCATCCAAAGCTATCTGATTTCGGATTGGCTAAAGTAGGTCCTAGTGGGGATAAAACCCACGTTTCAACCAGGGTTATGGGCACATATGGGTATTGTGCTCCAGATTATGCAATGACGGGCCAACTGACATTCAAATCAGATATCTACAGCTTTGGCGTTGTTTTATTGGAACTCATCACGGGCAGGAAAGCAATCGATCATTCAAAACCTCATTCAGAGCAAAATCTTGTGGCTTGGGCGCGACCTTTGTTCCGAGACCGGAAGAAGTTCTCACAAATGGTTGATCCATTGCTCCAAGGACAATATCCAGTGAGAGGACTATACCAATCTCTAGCCATAGCCGCAATGTGTGTTCAGGAGCAACCGAATATGCGGCCAGTTATATCTGATGTGGTAACCGCCTTAAACTACCTAGCTTCCCAGAAATATGATCCCCAATCTCAACCAAACCATAGCTCCCAAAAGAGACCATCTTCTCTTAAAATGGAACAGAACGATGATAAGAGGGAACGGGACGATGATAAGAGGGAAACTTCAGACAACGAGGGTTCAGAGAGAGAGTGA 1290 43.64 MGCFRCTGSSSKKSENIEENNPHTFNSKTHKPVDRTPSDKAKVNSSLAVKRDSDVKVVVTKDDQLALDVKKLNLKDEVSEEGESNGRAKTFTFEELAAATGNFRSDCFLGEGGFGKVYKGYLQKVNEVVAIKQLDRNGLQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPLGSLENHLHDLRPGAKVIDWNTRMKIAAGAARGLEYLHEKMKPPVIYRDLKCSNILLGEGYHPKLSDFGLAKVGPSGDKTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHSKPHSEQNLVAWARPLFRDRKKFSQMVDPLLQGQYPVRGLYQSLAIAAMCVQEQPNMRPVISDVVTALNYLASQKYDPQSQPNHSSQKRPSSLKMEQNDDKRERDDDKRETSDNEGSERE 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2313428 2316249 + CcPI632755_03g002220.1 Cco03g0222 173581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0222 429 FunFam probable serine/threonine-protein kinase RLCKVII 75 179 - -
Cco03g0222 429 FunFam Serine/threonine-protein kinase PBS1 180 396 - -
Cco03g0222 429 MobiDBLite consensus disorder prediction 1 44 - -
Cco03g0222 429 SMART serkin_6 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0222 429 MobiDBLite consensus disorder prediction 384 401 - -
Cco03g0222 429 MobiDBLite consensus disorder prediction 384 429 - -
Cco03g0222 429 Gene3D Phosphorylase Kinase; domain 1 71 179 - -
Cco03g0222 429 PANTHER OS07G0668900 PROTEIN 52 406 - -
Cco03g0222 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco03g0222 429 Gene3D Transferase(Phosphotransferase) domain 1 180 408 - -
Cco03g0222 429 CDD STKc_IRAK 109 378 - -
Cco03g0222 429 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Cco03g0222 429 SUPERFAMILY Protein kinase-like (PK-like) 89 399 IPR011009 -
Cco03g0222 429 ProSiteProfiles Protein kinase domain profile. 103 380 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco03g0222 429 MobiDBLite consensus disorder prediction 16 38 - -
Cco03g0222 429 MobiDBLite consensus disorder prediction 402 429 - -
Cco03g0222 429 Pfam Protein kinase domain 108 320 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g2219 Cco-Chr2:34782653 Cco03g0222 Cco-Chr3:2313428 1.00E-147 dispersed
Cco03g0222 Cco-Chr3:2313428 Cco10g2058 Cco-Chr10:33962794 1.20E-144 dispersed
Cco04g0612 Cco-Chr4:19958233 Cco03g0222 Cco-Chr3:2313428 2.30E-22 dispersed
Cco02g2275 Cco-Chr2:35325850 Cco03g0222 Cco-Chr3:2313428 1.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86635 PF00069 Pkinase 5.70E-44 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0222 - - - 0.0