Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0236 GGGACAAAGAGAGGAGATATGATGTCTGAATTTGATGGCCTTTCTGGTCTGTCCACAATCAGCAATCTGATTGGTCAACACAATCCTAATTCCAACCCTAATTCACTTGTTCCTCTTAAGAAGAAGAGAAATTTACCAGGAACACCAGATCCAGATGCGGAAGTAATAGCGATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAAAGCTGCGTGCACCACGACCCGGCGAGGGCGCTCGGCGACCTCACTGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCCAACCTTCATAAACAACAACTTTTCTCCTACTTCTTCTTCACTACTTTTCCAACCAAACTTAGCCACCGCCACCGTCGCTGCCGATCAATCCTCCCTTGCCCACAATTTTCCTAACATTATCTCTGACCACGACGGCGACCACAAGCCCCATGCTCTTCCGCTGTCGTCGCCACTGCAGCTCCCGCTCTGGCTCGATCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACTGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCCAACGACGGCCTCCTCGTACGCAGCGGCGCCCCACATGTCCGCCACCGCGCTCCTCCAAAATGCCGCTCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACGGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGCCGCGGTCTTATCGGATGGCCGTCCGATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACTCCGGTGGGTTCCAATCAATACAGTGATCAGAGCCGCGGCCATTAG 1272 50.55 GTKRGDMMSEFDGLSGLSTISNLIGQHNPNSNPNSLVPLKKKRNLPGTPDPDAEVIAMSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHHHHHPTFINNNFSPTSSSLLFQPNLATATVAADQSSLAHNFPNIISDHDGDHKPHALPLSSPLQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPPTTASSYAAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAAAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSNQYSDQSRGH 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2521068 2523693 - CcPI632755_03g002360.1 Cco03g0236 173595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0236 423 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Cco03g0236 423 MobiDBLite consensus disorder prediction 23 49 - -
Cco03g0236 423 Gene3D Classic Zinc Finger 65 92 - -
Cco03g0236 423 FunFam protein indeterminate-domain 12-like 48 116 - -
Cco03g0236 423 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 171 209 - -
Cco03g0236 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Cco03g0236 423 Gene3D Classic Zinc Finger 102 194 - -
Cco03g0236 423 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 144 168 - -
Cco03g0236 423 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 407 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco03g0236 423 Pfam Zinc finger, C2H2 type 69 91 IPR013087 -
Cco03g0236 423 MobiDBLite consensus disorder prediction 23 38 - -
Cco03g0236 423 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 106 140 - -
Cco03g0236 423 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Cco03g0236 423 SMART c2h2final6 145 165 IPR013087 -
Cco03g0236 423 SMART c2h2final6 69 91 IPR013087 -
Cco03g0236 423 SMART c2h2final6 110 140 IPR013087 -
Cco03g0236 423 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0236 Cco-Chr3:2521068 Cco10g2030 Cco-Chr10:33714856 8.90E-87 dispersed
Cco03g0236 Cco-Chr3:2521068 Cco04g1699 Cco-Chr4:32146844 2.30E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58893 PF12171 zf-C2H2_jaz 6.00E-05 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0236 K25870 - csv:101212420 620.542