Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco03g0246 ATGGAGAAAAGTGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCACAGGGTCTTTGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGGGCAGATGCTGTGAACAGTATGGTATATGAAGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCAGGCTCAGTTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTGCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA 531 42.56 MEKSEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSVFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNIASPQSYQTYSYLFEEGNILEPLWT 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2703618 2705902 - CcPI632755_03g002460.1 Cco03g0246 173605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco03g0246 176 Coils Coil 93 120 - -
Cco03g0246 176 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Cco03g0246 176 Pfam Lateral organ boundaries (LOB) domain 14 111 IPR004883 -
Cco03g0246 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 13 142 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0246 Cco-Chr3:2703618 Cco07g0478 Cco-Chr7:5715761 3.00E-36 dispersed
Cco03g0246 Cco-Chr3:2703618 Cco03g0247 Cco-Chr3:2730692 8.50E-68 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
58894 PF03195 LOB 1.30E-38 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco03g0246 - - - 0.0