Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco03g0246 | ATGGAGAAAAGTGAGGCACATACGGTGGCGGTGGGTAGTCCGTGTGCGGCTTGTAAAATTCTCCGGCGAAGATGCCGAGAGAATTGCGAATTGGGGCCGTATTTTCCTCCAACGGAACCTCTCAAATTCACTATTGCTCACAGGGTCTTTGGTGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTAAGTCGCAAAGGGCAGATGCTGTGAACAGTATGGTATATGAAGCAAGTGCAAGAATAAGAGATCCAATTTATGGATGTGCAGGCTCAGTTTTCCAACTCCAAAAACAAATAAATGACCTACAAGGAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAAAATGCAATGTCAACAAGCCAATTTGATGACTCTAATTTGCAAGGAATTGGCTCAAATGCCACAACCACCAATGTATGATCATCAACCACTTAATCAAAATTACAACATTGCTAGCCCTCAAAGTTATCAAACCTATTCATACTTATTTGAGGAGGGTAATATTTTGGAGCCTCTTTGGACTTGA | 531 | 42.56 | MEKSEAHTVAVGSPCAACKILRRRCRENCELGPYFPPTEPLKFTIAHRVFGASNIIKLLQDLPKSQRADAVNSMVYEASARIRDPIYGCAGSVFQLQKQINDLQGELAKAQAEVLKMQCQQANLMTLICKELAQMPQPPMYDHQPLNQNYNIASPQSYQTYSYLFEEGNILEPLWT | 176 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2703618 | 2705902 | - | CcPI632755_03g002460.1 | Cco03g0246 | 173605 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco03g0246 | 176 | Coils | Coil | 93 | 120 | - | - | |
Cco03g0246 | 176 | ProSiteProfiles | LOB domain profile. | 13 | 114 | IPR004883 | - | |
Cco03g0246 | 176 | Pfam | Lateral organ boundaries (LOB) domain | 14 | 111 | IPR004883 | - | |
Cco03g0246 | 176 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 13 | 142 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g0246 | Cco-Chr3:2703618 | Cco07g0478 | Cco-Chr7:5715761 | 3.00E-36 | dispersed | |
Cco03g0246 | Cco-Chr3:2703618 | Cco03g0247 | Cco-Chr3:2730692 | 8.50E-68 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
58894 | PF03195 | LOB | 1.30E-38 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco03g0246 | - | - | - | 0.0 |